Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
RNF4P78317 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF4P78317 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.2■□□□□ 0.5
RNF4P78317 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RNF4P78317 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF4P78317 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 MIR718-201ENST00000390190 70 ntBASIC18.19■□□□□ 0.5
RNF4P78317 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.19■□□□□ 0.5
RNF4P78317 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF4P78317 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
RNF4P78317 RPS2P4-201ENST00000476944 856 ntBASIC18.19■□□□□ 0.5
RNF4P78317 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
RNF4P78317 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF4P78317 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.19■□□□□ 0.5
RNF4P78317 AL135905.2-201ENST00000584934 1404 ntBASIC18.19■□□□□ 0.5
RNF4P78317 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
RNF4P78317 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
RNF4P78317 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RNF4P78317 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF4P78317 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RNF4P78317 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF4P78317 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
RNF4P78317 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
RNF4P78317 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF4P78317 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
RNF4P78317 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
RNF4P78317 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.18■□□□□ 0.5
RNF4P78317 TUBB8P6-201ENST00000436895 1288 ntBASIC18.18■□□□□ 0.5
RNF4P78317 KRT18P16-201ENST00000510337 1294 ntBASIC18.18■□□□□ 0.5
RNF4P78317 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.18■□□□□ 0.5
RNF4P78317 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.18■□□□□ 0.5
RNF4P78317 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF4P78317 Z99916.2-201ENST00000604037 246 ntBASIC18.18■□□□□ 0.5
RNF4P78317 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.18■□□□□ 0.5
RNF4P78317 TMEM179-206ENST00000616017 1645 ntBASIC18.18■□□□□ 0.5
RNF4P78317 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
RNF4P78317 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RNF4P78317 HTR7P1-201ENST00000538670 1336 ntBASIC18.18■□□□□ 0.5
RNF4P78317 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
RNF4P78317 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF4P78317 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF4P78317 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF4P78317 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF4P78317 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
RNF4P78317 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF4P78317 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF4P78317 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF4P78317 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF4P78317 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
RNF4P78317 RPS2P55-201ENST00000397318 883 ntBASIC18.17■□□□□ 0.5
RNF4P78317 AC012618.2-201ENST00000428058 849 ntBASIC18.17■□□□□ 0.5
RNF4P78317 AC107956.1-201ENST00000494359 873 ntBASIC18.17■□□□□ 0.5
RNF4P78317 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF4P78317 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
RNF4P78317 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF4P78317 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF4P78317 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF4P78317 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF4P78317 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
RNF4P78317 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF4P78317 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
RNF4P78317 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF4P78317 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF4P78317 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF4P78317 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF4P78317 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF4P78317 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF4P78317 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
RNF4P78317 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.16■□□□□ 0.5
RNF4P78317 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF4P78317 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms