Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.42■□□□□ 0.54
RFX3P48380 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFX3P48380 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFX3P48380 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFX3P48380 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFX3P48380 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RFX3P48380 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.42■□□□□ 0.54
RFX3P48380 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RFX3P48380 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.41■□□□□ 0.54
RFX3P48380 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.41■□□□□ 0.54
RFX3P48380 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RFX3P48380 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.41■□□□□ 0.54
RFX3P48380 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RFX3P48380 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.41■□□□□ 0.54
RFX3P48380 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RFX3P48380 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.41■□□□□ 0.54
RFX3P48380 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.41■□□□□ 0.54
RFX3P48380 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.41■□□□□ 0.54
RFX3P48380 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.41■□□□□ 0.54
RFX3P48380 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
RFX3P48380 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.41■□□□□ 0.54
RFX3P48380 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.41■□□□□ 0.54
RFX3P48380 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RFX3P48380 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
RFX3P48380 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.4■□□□□ 0.54
RFX3P48380 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RFX3P48380 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.4■□□□□ 0.54
RFX3P48380 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX3P48380 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
RFX3P48380 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.4■□□□□ 0.54
RFX3P48380 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.4■□□□□ 0.54
RFX3P48380 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.4■□□□□ 0.54
RFX3P48380 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.4■□□□□ 0.54
RFX3P48380 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX3P48380 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
RFX3P48380 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX3P48380 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFX3P48380 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
RFX3P48380 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
RFX3P48380 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.39■□□□□ 0.54
RFX3P48380 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RFX3P48380 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
RFX3P48380 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RFX3P48380 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.39■□□□□ 0.53
RFX3P48380 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
RFX3P48380 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.39■□□□□ 0.53
RFX3P48380 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 AC090340.1-201ENST00000620778 4980 ntBASIC18.39■□□□□ 0.53
RFX3P48380 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.39■□□□□ 0.53
RFX3P48380 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.39■□□□□ 0.53
RFX3P48380 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.39■□□□□ 0.53
RFX3P48380 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 RNA5SP413-201ENST00000516373 109 ntBASIC18.39■□□□□ 0.53
RFX3P48380 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
RFX3P48380 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.39■□□□□ 0.53
RFX3P48380 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.39■□□□□ 0.53
RFX3P48380 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.39■□□□□ 0.53
RFX3P48380 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.39■□□□□ 0.53
RFX3P48380 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.39■□□□□ 0.53
RFX3P48380 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFX3P48380 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
RFX3P48380 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFX3P48380 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.38■□□□□ 0.53
RFX3P48380 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFX3P48380 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFX3P48380 AC073210.2-201ENST00000430369 194 ntBASIC18.38■□□□□ 0.53
RFX3P48380 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.38■□□□□ 0.53
RFX3P48380 PNMA6B-201ENST00000538162 1200 ntBASIC18.38■□□□□ 0.53
RFX3P48380 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFX3P48380 AC005829.2-201ENST00000571422 1056 ntBASIC18.38■□□□□ 0.53
RFX3P48380 AC060766.5-201ENST00000590539 871 ntBASIC18.38■□□□□ 0.53
RFX3P48380 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.38■□□□□ 0.53
RFX3P48380 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.38■□□□□ 0.53
RFX3P48380 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RFX3P48380 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms