Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX2P35548 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSX2P35548 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
MSX2P35548 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSX2P35548 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
MSX2P35548 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.72■□□□□ 0.59
MSX2P35548 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSX2P35548 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.72■□□□□ 0.59
MSX2P35548 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX2P35548 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.71■□□□□ 0.59
MSX2P35548 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.71■□□□□ 0.59
MSX2P35548 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.71■□□□□ 0.59
MSX2P35548 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX2P35548 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX2P35548 AL161938.1-201ENST00000569833 2180 ntBASIC18.71■□□□□ 0.59
MSX2P35548 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
MSX2P35548 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX2P35548 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.71■□□□□ 0.59
MSX2P35548 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.71■□□□□ 0.59
MSX2P35548 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.71■□□□□ 0.59
MSX2P35548 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX2P35548 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX2P35548 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX2P35548 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.71■□□□□ 0.59
MSX2P35548 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX2P35548 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSX2P35548 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
MSX2P35548 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.71■□□□□ 0.59
MSX2P35548 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
MSX2P35548 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.58
MSX2P35548 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.58
MSX2P35548 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.58
MSX2P35548 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
MSX2P35548 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
MSX2P35548 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.7■□□□□ 0.58
MSX2P35548 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.7■□□□□ 0.58
MSX2P35548 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.7■□□□□ 0.58
MSX2P35548 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.7■□□□□ 0.58
MSX2P35548 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.7■□□□□ 0.58
MSX2P35548 CCDC92B-201ENST00000575506 885 ntBASIC18.7■□□□□ 0.58
MSX2P35548 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC18.7■□□□□ 0.58
MSX2P35548 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
MSX2P35548 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MSX2P35548 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
MSX2P35548 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
MSX2P35548 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.69■□□□□ 0.58
MSX2P35548 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.69■□□□□ 0.58
MSX2P35548 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.69■□□□□ 0.58
MSX2P35548 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
MSX2P35548 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
MSX2P35548 AL031432.3-201ENST00000607698 485 ntBASIC18.69■□□□□ 0.58
MSX2P35548 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
MSX2P35548 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
MSX2P35548 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.69■□□□□ 0.58
MSX2P35548 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.69■□□□□ 0.58
MSX2P35548 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
MSX2P35548 AC006333.2-201ENST00000607957 2099 ntBASIC18.69■□□□□ 0.58
MSX2P35548 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
MSX2P35548 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.68■□□□□ 0.58
MSX2P35548 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.68■□□□□ 0.58
MSX2P35548 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 KRT8P17-201ENST00000453110 1448 ntBASIC18.68■□□□□ 0.58
MSX2P35548 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MSX2P35548 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.68■□□□□ 0.58
MSX2P35548 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms