Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL5A3P25940 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC24.91■■□□□ 1.58
COL5A3P25940 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC24.9■■□□□ 1.58
COL5A3P25940 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL5A3P25940 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL5A3P25940 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC24.9■■□□□ 1.58
COL5A3P25940 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC24.9■■□□□ 1.58
COL5A3P25940 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
COL5A3P25940 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
COL5A3P25940 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC24.9■■□□□ 1.58
COL5A3P25940 AC093458.2-201ENST00000623150 629 ntBASIC24.9■■□□□ 1.58
COL5A3P25940 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC24.9■■□□□ 1.58
COL5A3P25940 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL5A3P25940 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC24.9■■□□□ 1.58
COL5A3P25940 KRT8P41-201ENST00000533985 1514 ntBASIC24.9■■□□□ 1.58
COL5A3P25940 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL5A3P25940 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL5A3P25940 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC24.9■■□□□ 1.58
COL5A3P25940 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC24.9■■□□□ 1.58
COL5A3P25940 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
COL5A3P25940 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
COL5A3P25940 HCG4P8-203ENST00000443049 980 ntBASIC24.89■■□□□ 1.58
COL5A3P25940 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC24.89■■□□□ 1.58
COL5A3P25940 AL353719.1-201ENST00000566847 864 ntBASIC24.89■■□□□ 1.58
COL5A3P25940 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC24.89■■□□□ 1.58
COL5A3P25940 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC24.89■■□□□ 1.58
COL5A3P25940 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
COL5A3P25940 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.58
COL5A3P25940 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC24.89■■□□□ 1.58
COL5A3P25940 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC24.89■■□□□ 1.58
COL5A3P25940 AP001271.2-201ENST00000624018 1556 ntBASIC24.89■■□□□ 1.58
COL5A3P25940 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC24.89■■□□□ 1.57
COL5A3P25940 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
COL5A3P25940 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
COL5A3P25940 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC24.89■■□□□ 1.57
COL5A3P25940 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC24.89■■□□□ 1.57
COL5A3P25940 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC24.89■■□□□ 1.57
COL5A3P25940 AC011558.1-201ENST00000623459 338 ntBASIC24.89■■□□□ 1.57
COL5A3P25940 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC24.88■■□□□ 1.57
COL5A3P25940 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
COL5A3P25940 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
COL5A3P25940 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
COL5A3P25940 IER3-202ENST00000376377 1350 ntBASIC24.88■■□□□ 1.57
COL5A3P25940 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
COL5A3P25940 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC24.88■■□□□ 1.57
COL5A3P25940 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
COL5A3P25940 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
COL5A3P25940 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC24.88■■□□□ 1.57
COL5A3P25940 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC24.88■■□□□ 1.57
COL5A3P25940 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC24.88■■□□□ 1.57
COL5A3P25940 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC24.88■■□□□ 1.57
COL5A3P25940 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
COL5A3P25940 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC24.88■■□□□ 1.57
COL5A3P25940 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
COL5A3P25940 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
COL5A3P25940 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC24.87■■□□□ 1.57
COL5A3P25940 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
COL5A3P25940 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC24.87■■□□□ 1.57
COL5A3P25940 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
COL5A3P25940 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC24.87■■□□□ 1.57
COL5A3P25940 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
COL5A3P25940 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC24.87■■□□□ 1.57
COL5A3P25940 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC24.87■■□□□ 1.57
COL5A3P25940 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC24.87■■□□□ 1.57
COL5A3P25940 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
COL5A3P25940 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
COL5A3P25940 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
COL5A3P25940 MOK-225ENST00000522867 1883 ntTSL 5 BASIC24.87■■□□□ 1.57
COL5A3P25940 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
COL5A3P25940 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC24.86■■□□□ 1.57
COL5A3P25940 AC112907.2-201ENST00000448639 330 ntBASIC24.86■■□□□ 1.57
COL5A3P25940 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC24.86■■□□□ 1.57
COL5A3P25940 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
COL5A3P25940 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
COL5A3P25940 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
COL5A3P25940 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
COL5A3P25940 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
COL5A3P25940 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
COL5A3P25940 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC24.86■■□□□ 1.57
COL5A3P25940 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC24.86■■□□□ 1.57
COL5A3P25940 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC24.86■■□□□ 1.57
COL5A3P25940 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC24.86■■□□□ 1.57
COL5A3P25940 AL160286.2-201ENST00000567150 934 ntBASIC24.86■■□□□ 1.57
COL5A3P25940 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC24.86■■□□□ 1.57
COL5A3P25940 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC24.86■■□□□ 1.57
COL5A3P25940 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
COL5A3P25940 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC24.86■■□□□ 1.57
COL5A3P25940 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC24.86■■□□□ 1.57
COL5A3P25940 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
COL5A3P25940 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
COL5A3P25940 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
COL5A3P25940 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC24.85■■□□□ 1.57
COL5A3P25940 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
COL5A3P25940 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
COL5A3P25940 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC24.85■■□□□ 1.57
COL5A3P25940 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC24.85■■□□□ 1.57
COL5A3P25940 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC24.85■■□□□ 1.57
COL5A3P25940 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
COL5A3P25940 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
COL5A3P25940 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC24.84■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms