Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 MIR4466-201ENST00000606121 54 ntBASIC14.76□□□□□ -0.05
HLA-DQA1P01909 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
HLA-DQA1P01909 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 AL354751.1-201ENST00000412768 1863 ntBASIC14.75□□□□□ -0.05
HLA-DQA1P01909 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 MFF-207ENST00000409565 1548 ntTSL 2 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 AP004607.4-201ENST00000530158 1459 ntBASIC14.75□□□□□ -0.05
HLA-DQA1P01909 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-DQA1P01909 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC14.74□□□□□ -0.05
HLA-DQA1P01909 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 AC068880.1-201ENST00000507289 2297 ntBASIC14.74□□□□□ -0.05
HLA-DQA1P01909 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 BICD1-207ENST00000551848 1962 ntBASIC14.74□□□□□ -0.05
HLA-DQA1P01909 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HLA-DQA1P01909 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 SYT6-210ENST00000641643 1587 ntBASIC14.73□□□□□ -0.05
HLA-DQA1P01909 USP49-202ENST00000373010 2446 ntTSL 5 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 MKRN4P-201ENST00000444706 1521 ntBASIC14.73□□□□□ -0.05
HLA-DQA1P01909 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
HLA-DQA1P01909 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms