Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TRIM13O60858 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM13O60858 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.31■□□□□ 0.68
TRIM13O60858 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM13O60858 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM13O60858 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.31■□□□□ 0.68
TRIM13O60858 AC137761.2-201ENST00000561729 223 ntBASIC19.31■□□□□ 0.68
TRIM13O60858 AC145350.3-201ENST00000569033 163 ntBASIC19.31■□□□□ 0.68
TRIM13O60858 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM13O60858 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TRIM13O60858 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.31■□□□□ 0.68
TRIM13O60858 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TRIM13O60858 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
TRIM13O60858 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM13O60858 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM13O60858 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM13O60858 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TRIM13O60858 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM13O60858 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM13O60858 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM13O60858 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM13O60858 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM13O60858 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM13O60858 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TRIM13O60858 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM13O60858 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM13O60858 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM13O60858 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM13O60858 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM13O60858 DUX4L16-201ENST00000555130 1264 ntBASIC19.3■□□□□ 0.68
TRIM13O60858 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM13O60858 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM13O60858 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM13O60858 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM13O60858 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM13O60858 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM13O60858 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM13O60858 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRIM13O60858 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM13O60858 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM13O60858 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM13O60858 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRIM13O60858 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.29■□□□□ 0.68
TRIM13O60858 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.29■□□□□ 0.68
TRIM13O60858 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM13O60858 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM13O60858 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM13O60858 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM13O60858 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRIM13O60858 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM13O60858 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
TRIM13O60858 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
TRIM13O60858 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM13O60858 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM13O60858 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM13O60858 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
TRIM13O60858 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
TRIM13O60858 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
TRIM13O60858 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM13O60858 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
TRIM13O60858 AC069236.1-201ENST00000604339 616 ntBASIC19.28■□□□□ 0.68
TRIM13O60858 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.28■□□□□ 0.68
TRIM13O60858 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM13O60858 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.28■□□□□ 0.68
TRIM13O60858 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM13O60858 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
TRIM13O60858 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM13O60858 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
TRIM13O60858 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM13O60858 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms