Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SNX3O60493 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.34■□□□□ 0.69
SNX3O60493 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNX3O60493 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.34■□□□□ 0.69
SNX3O60493 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.34■□□□□ 0.69
SNX3O60493 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SNX3O60493 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.34■□□□□ 0.69
SNX3O60493 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNX3O60493 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNX3O60493 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.34■□□□□ 0.69
SNX3O60493 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SNX3O60493 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNX3O60493 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SNX3O60493 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.34■□□□□ 0.69
SNX3O60493 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNX3O60493 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNX3O60493 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SNX3O60493 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SNX3O60493 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SNX3O60493 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SNX3O60493 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.33■□□□□ 0.69
SNX3O60493 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SNX3O60493 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SNX3O60493 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SNX3O60493 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SNX3O60493 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SNX3O60493 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.33■□□□□ 0.69
SNX3O60493 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
SNX3O60493 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SNX3O60493 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SNX3O60493 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SNX3O60493 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.33■□□□□ 0.68
SNX3O60493 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.33■□□□□ 0.68
SNX3O60493 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SNX3O60493 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.33■□□□□ 0.68
SNX3O60493 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.33■□□□□ 0.68
SNX3O60493 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.33■□□□□ 0.68
SNX3O60493 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.33■□□□□ 0.68
SNX3O60493 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SNX3O60493 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SNX3O60493 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.68
SNX3O60493 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SNX3O60493 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SNX3O60493 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SNX3O60493 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SNX3O60493 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.33■□□□□ 0.68
SNX3O60493 FP475955.4-201ENST00000623131 1990 ntBASIC19.33■□□□□ 0.68
SNX3O60493 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SNX3O60493 KRT87P-202ENST00000534226 1464 ntBASIC19.33■□□□□ 0.68
SNX3O60493 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SNX3O60493 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.32■□□□□ 0.68
SNX3O60493 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SNX3O60493 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.32■□□□□ 0.68
SNX3O60493 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.32■□□□□ 0.68
SNX3O60493 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.32■□□□□ 0.68
SNX3O60493 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.32■□□□□ 0.68
SNX3O60493 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 TEX21P-204ENST00000641479 1693 ntBASIC19.32■□□□□ 0.68
SNX3O60493 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 KRT8P17-201ENST00000453110 1448 ntBASIC19.32■□□□□ 0.68
SNX3O60493 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SNX3O60493 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.32■□□□□ 0.68
SNX3O60493 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SNX3O60493 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.32■□□□□ 0.68
SNX3O60493 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 TSPY26P-201ENST00000476365 1326 ntBASIC19.31■□□□□ 0.68
SNX3O60493 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SNX3O60493 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.31■□□□□ 0.68
SNX3O60493 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SNX3O60493 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.31■□□□□ 0.68
SNX3O60493 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.31■□□□□ 0.68
SNX3O60493 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.31■□□□□ 0.68
SNX3O60493 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 KRT16P6-202ENST00000425692 1426 ntBASIC19.31■□□□□ 0.68
SNX3O60493 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.31■□□□□ 0.68
SNX3O60493 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.31■□□□□ 0.68
SNX3O60493 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms