Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDCBPO00560 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC16.68■□□□□ 0.26
SDCBPO00560 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
SDCBPO00560 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDCBPO00560 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.68■□□□□ 0.26
SDCBPO00560 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDCBPO00560 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SDCBPO00560 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SDCBPO00560 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC16.68■□□□□ 0.26
SDCBPO00560 MIR935-201ENST00000401179 91 ntBASIC16.68■□□□□ 0.26
SDCBPO00560 AC007322.1-201ENST00000426983 750 ntBASIC16.68■□□□□ 0.26
SDCBPO00560 RARRES2P4-201ENST00000514074 484 ntBASIC16.68■□□□□ 0.26
SDCBPO00560 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC16.68■□□□□ 0.26
SDCBPO00560 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC16.68■□□□□ 0.26
SDCBPO00560 AC069236.1-201ENST00000604339 616 ntBASIC16.68■□□□□ 0.26
SDCBPO00560 AC008694.1-202ENST00000636953 945 ntBASIC16.68■□□□□ 0.26
SDCBPO00560 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDCBPO00560 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC16.68■□□□□ 0.26
SDCBPO00560 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDCBPO00560 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SDCBPO00560 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC16.68■□□□□ 0.26
SDCBPO00560 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDCBPO00560 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDCBPO00560 AC068338.2-201ENST00000563278 1430 ntBASIC16.68■□□□□ 0.26
SDCBPO00560 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDCBPO00560 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDCBPO00560 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SDCBPO00560 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.67■□□□□ 0.26
SDCBPO00560 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SDCBPO00560 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDCBPO00560 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDCBPO00560 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SDCBPO00560 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
SDCBPO00560 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC16.67■□□□□ 0.26
SDCBPO00560 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDCBPO00560 MDK-213ENST00000617138 635 ntTSL 2 BASIC16.67■□□□□ 0.26
SDCBPO00560 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDCBPO00560 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SDCBPO00560 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SDCBPO00560 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDCBPO00560 GOLGA2P11-201ENST00000562660 1621 ntBASIC16.67■□□□□ 0.26
SDCBPO00560 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SDCBPO00560 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SDCBPO00560 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC16.66■□□□□ 0.26
SDCBPO00560 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 MCRIP2P1-201ENST00000394346 511 ntBASIC16.66■□□□□ 0.26
SDCBPO00560 CYP2T1P-201ENST00000432607 1285 ntBASIC16.66■□□□□ 0.26
SDCBPO00560 PARL-206ENST00000435888 1098 ntTSL 5 BASIC16.66■□□□□ 0.26
SDCBPO00560 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC16.66■□□□□ 0.26
SDCBPO00560 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDCBPO00560 TP73-202ENST00000354437 2140 ntTSL 5 BASIC16.66■□□□□ 0.26
SDCBPO00560 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC16.65■□□□□ 0.26
SDCBPO00560 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC16.65■□□□□ 0.26
SDCBPO00560 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC16.65■□□□□ 0.26
SDCBPO00560 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SDCBPO00560 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC16.65■□□□□ 0.26
SDCBPO00560 NEFHP1-201ENST00000412845 2629 ntBASIC16.65■□□□□ 0.26
SDCBPO00560 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 METTL26-203ENST00000397664 604 ntTSL 2 BASIC16.65■□□□□ 0.26
SDCBPO00560 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC16.65■□□□□ 0.26
SDCBPO00560 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 AL032819.2-201ENST00000624543 2162 ntBASIC16.65■□□□□ 0.26
SDCBPO00560 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.65■□□□□ 0.26
SDCBPO00560 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDCBPO00560 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
SDCBPO00560 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
SDCBPO00560 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms