Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 AC092437.1-201ENST00000624794 1048 ntBASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 AC073111.5-205ENST00000641717 521 ntBASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CPSF4LA6NMK7 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.09■□□□□ 0.49
CPSF4LA6NMK7 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.08■□□□□ 0.49
CPSF4LA6NMK7 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CPSF4LA6NMK7 MKRN4P-201ENST00000444706 1521 ntBASIC18.08■□□□□ 0.49
CPSF4LA6NMK7 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.08■□□□□ 0.49
CPSF4LA6NMK7 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.08■□□□□ 0.49
CPSF4LA6NMK7 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
CPSF4LA6NMK7 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.08■□□□□ 0.49
CPSF4LA6NMK7 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.08■□□□□ 0.49
CPSF4LA6NMK7 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 AC105036.2-201ENST00000569468 176 ntBASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 AC133552.2-202ENST00000575694 574 ntBASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 AL050303.2-201ENST00000619798 666 ntBASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CPSF4LA6NMK7 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 BX323043.1-201ENST00000641006 1765 ntBASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 GPX1P1-201ENST00000388829 606 ntBASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 Z82202.1-201ENST00000623446 1880 ntBASIC18.07■□□□□ 0.48
CPSF4LA6NMK7 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms