Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC21.16■□□□□ 0.98
LRRC53A6NM62 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC53A6NM62 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC53A6NM62 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.16■□□□□ 0.98
LRRC53A6NM62 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC53A6NM62 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC53A6NM62 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.15■□□□□ 0.98
LRRC53A6NM62 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
LRRC53A6NM62 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
LRRC53A6NM62 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRC53A6NM62 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRC53A6NM62 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
LRRC53A6NM62 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 BX276092.2-201ENST00000417668 665 ntBASIC21.15■□□□□ 0.98
LRRC53A6NM62 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRC53A6NM62 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.15■□□□□ 0.98
LRRC53A6NM62 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LRRC53A6NM62 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRC53A6NM62 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRC53A6NM62 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRC53A6NM62 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC53A6NM62 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.14■□□□□ 0.98
LRRC53A6NM62 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC53A6NM62 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC53A6NM62 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC53A6NM62 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC53A6NM62 AF201337.1-201ENST00000520239 748 ntBASIC21.14■□□□□ 0.97
LRRC53A6NM62 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC53A6NM62 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC53A6NM62 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
LRRC53A6NM62 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.14■□□□□ 0.97
LRRC53A6NM62 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.14■□□□□ 0.97
LRRC53A6NM62 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC53A6NM62 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.13■□□□□ 0.97
LRRC53A6NM62 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
LRRC53A6NM62 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
LRRC53A6NM62 AC093503.3-201ENST00000624917 2352 ntBASIC21.13■□□□□ 0.97
LRRC53A6NM62 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 MIR663A-201ENST00000385250 93 ntBASIC21.13■□□□□ 0.97
LRRC53A6NM62 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.13■□□□□ 0.97
LRRC53A6NM62 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.13■□□□□ 0.97
LRRC53A6NM62 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
LRRC53A6NM62 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.13■□□□□ 0.97
LRRC53A6NM62 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.13■□□□□ 0.97
LRRC53A6NM62 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.13■□□□□ 0.97
LRRC53A6NM62 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.13■□□□□ 0.97
LRRC53A6NM62 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.13■□□□□ 0.97
LRRC53A6NM62 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC53A6NM62 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.12■□□□□ 0.97
LRRC53A6NM62 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC53A6NM62 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC53A6NM62 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.12■□□□□ 0.97
LRRC53A6NM62 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC53A6NM62 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.12■□□□□ 0.97
LRRC53A6NM62 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.12■□□□□ 0.97
LRRC53A6NM62 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC53A6NM62 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC53A6NM62 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC53A6NM62 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.12■□□□□ 0.97
LRRC53A6NM62 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.12■□□□□ 0.97
LRRC53A6NM62 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
LRRC53A6NM62 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.12■□□□□ 0.97
LRRC53A6NM62 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC53A6NM62 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
LRRC53A6NM62 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.12■□□□□ 0.97
LRRC53A6NM62 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC53A6NM62 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC53A6NM62 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.11■□□□□ 0.97
LRRC53A6NM62 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC53A6NM62 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC53A6NM62 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC53A6NM62 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC53A6NM62 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
LRRC53A6NM62 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC53A6NM62 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC53A6NM62 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC53A6NM62 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms