Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.25□□□□□ -1.89
APOBP04114 AL133481.2-203ENST00000607558 139 ntBASIC3.25□□□□□ -1.89
APOBP04114 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC3.25□□□□□ -1.89
APOBP04114 NEK3-211ENST00000629912 141 ntTSL 5 BASIC3.25□□□□□ -1.89
APOBP04114 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC3.25□□□□□ -1.89
APOBP04114 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC3.25□□□□□ -1.89
APOBP04114 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC3.25□□□□□ -1.89
APOBP04114 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 ZFHX2-202ENST00000419474 9182 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
APOBP04114 KARSP3-201ENST00000571212 1504 ntBASIC3.25□□□□□ -1.89
APOBP04114 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 ASNSP1-204ENST00000641977 1664 ntBASIC3.25□□□□□ -1.89
APOBP04114 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.25□□□□□ -1.89
APOBP04114 OR52A4P-201ENST00000472867 958 ntBASIC3.25□□□□□ -1.89
APOBP04114 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC3.25□□□□□ -1.89
APOBP04114 GTF2F2P1-201ENST00000511083 675 ntBASIC3.25□□□□□ -1.89
APOBP04114 AC084824.1-201ENST00000550917 1005 ntBASIC3.25□□□□□ -1.89
APOBP04114 CDC42EP3P1-201ENST00000601004 764 ntBASIC3.25□□□□□ -1.89
APOBP04114 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC3.25□□□□□ -1.89
APOBP04114 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
APOBP04114 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 OR4F13P-202ENST00000560066 2054 ntBASIC3.25□□□□□ -1.89
APOBP04114 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.25□□□□□ -1.89
APOBP04114 RPS29P10-201ENST00000439197 166 ntBASIC3.25□□□□□ -1.89
APOBP04114 RPL10P17-201ENST00000453852 316 ntBASIC3.25□□□□□ -1.89
APOBP04114 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC3.25□□□□□ -1.89
APOBP04114 GAPDHP56-201ENST00000506031 988 ntBASIC3.25□□□□□ -1.89
APOBP04114 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 AL356218.2-201ENST00000605264 187 ntBASIC3.25□□□□□ -1.89
APOBP04114 AC008785.1-201ENST00000624475 456 ntBASIC3.25□□□□□ -1.89
APOBP04114 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC3.25□□□□□ -1.89
APOBP04114 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC3.25□□□□□ -1.89
APOBP04114 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 ZNF423-203ENST00000561648 7907 ntAPPRIS P3 TSL 5 BASIC3.25□□□□□ -1.89
APOBP04114 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC3.25□□□□□ -1.89
APOBP04114 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
APOBP04114 ZNF652P1-201ENST00000442420 1309 ntBASIC3.24□□□□□ -1.89
APOBP04114 COL4A6-201ENST00000334504 6700 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
APOBP04114 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC3.24□□□□□ -1.89
APOBP04114 TRHDE-201ENST00000261180 10733 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 RPS3AP23-201ENST00000401762 784 ntBASIC3.24□□□□□ -1.89
APOBP04114 SNORA84-201ENST00000459229 133 ntBASIC3.24□□□□□ -1.89
APOBP04114 CDV3-208ENST00000511392 554 ntTSL 5 BASIC3.24□□□□□ -1.89
APOBP04114 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC3.24□□□□□ -1.89
APOBP04114 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC3.24□□□□□ -1.89
APOBP04114 AC006130.2-201ENST00000586202 326 ntBASIC3.24□□□□□ -1.89
APOBP04114 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.24□□□□□ -1.89
APOBP04114 AC112200.1-201ENST00000625015 234 ntBASIC3.24□□□□□ -1.89
APOBP04114 AC144833.1-201ENST00000567953 4089 ntBASIC3.24□□□□□ -1.89
APOBP04114 AC100757.1-201ENST00000616872 1835 ntBASIC3.24□□□□□ -1.89
APOBP04114 PAPPA2-202ENST00000367662 9691 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
APOBP04114 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC3.24□□□□□ -1.89
APOBP04114 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC3.24□□□□□ -1.89
APOBP04114 AP001043.1-202ENST00000380931 5027 ntTSL 2 BASIC3.24□□□□□ -1.89
APOBP04114 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
APOBP04114 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.24□□□□□ -1.89
APOBP04114 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC3.24□□□□□ -1.89
APOBP04114 SAP18P1-201ENST00000512058 390 ntBASIC3.24□□□□□ -1.89
APOBP04114 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC3.24□□□□□ -1.89
APOBP04114 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC3.24□□□□□ -1.89
APOBP04114 AC079414.3-201ENST00000612986 1090 ntBASIC3.24□□□□□ -1.89
APOBP04114 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC3.24□□□□□ -1.89
APOBP04114 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC3.24□□□□□ -1.89
APOBP04114 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
APOBP04114 MAPK1-201ENST00000215832 11022 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC3.24□□□□□ -1.89
APOBP04114 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC3.24□□□□□ -1.89
APOBP04114 EBLN2-201ENST00000533473 1679 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
APOBP04114 ATP2B2-201ENST00000352432 8593 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 TRPC5-201ENST00000262839 5839 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 RNU1-136P-201ENST00000384181 164 ntBASIC3.24□□□□□ -1.89
APOBP04114 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 snoU13.1-201ENST00000459157 104 ntBASIC3.24□□□□□ -1.89
APOBP04114 NIP7P2-201ENST00000485801 544 ntBASIC3.24□□□□□ -1.89
APOBP04114 RGS5-219ENST00000528019 512 ntTSL 4 BASIC3.24□□□□□ -1.89
APOBP04114 OR7E128P-201ENST00000532736 1024 ntBASIC3.24□□□□□ -1.89
APOBP04114 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC3.24□□□□□ -1.89
APOBP04114 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC3.24□□□□□ -1.89
APOBP04114 AC022916.3-201ENST00000592961 742 ntBASIC3.24□□□□□ -1.89
APOBP04114 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC3.24□□□□□ -1.89
APOBP04114 AC098935.2-201ENST00000604222 466 ntBASIC3.24□□□□□ -1.89
APOBP04114 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC3.24□□□□□ -1.89
APOBP04114 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC3.24□□□□□ -1.89
APOBP04114 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
APOBP04114 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms