Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC139697.1-201ENST00000548429 745 ntBASIC4.23□□□□□ -1.73
HLA-DQA1P01909 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 SETP1-201ENST00000556014 845 ntBASIC4.23□□□□□ -1.73
HLA-DQA1P01909 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 AC063977.7-201ENST00000594454 337 ntBASIC4.23□□□□□ -1.73
HLA-DQA1P01909 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 AC012368.3-201ENST00000604190 219 ntBASIC4.23□□□□□ -1.73
HLA-DQA1P01909 GAPDHP41-201ENST00000613707 975 ntBASIC4.23□□□□□ -1.73
HLA-DQA1P01909 AC089999.3-201ENST00000622440 577 ntBASIC4.23□□□□□ -1.73
HLA-DQA1P01909 AP001962.1-201ENST00000624114 559 ntBASIC4.23□□□□□ -1.73
HLA-DQA1P01909 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 PROS2P-201ENST00000474651 1951 ntBASIC4.23□□□□□ -1.73
HLA-DQA1P01909 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 MAPK10-320ENST00000641462 6696 ntBASIC4.23□□□□□ -1.73
HLA-DQA1P01909 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DQA1P01909 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AC114947.2-201ENST00000565748 2125 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 RBPJP7-201ENST00000442803 1447 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AL034417.1-201ENST00000399343 800 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AL359643.1-201ENST00000404109 423 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 RN7SKP144-201ENST00000411108 279 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 EEF1A1P29-201ENST00000416082 1096 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 RPL19P16-201ENST00000433839 588 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 IGBP1P3-201ENST00000447449 1000 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 CEACAMP11-201ENST00000455211 583 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 RNU7-157P-201ENST00000459600 66 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 RPS7P10-201ENST00000464254 603 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 UBFD1P1-201ENST00000473259 814 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AC005017.1-201ENST00000482002 490 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 RPL29P23-201ENST00000486188 442 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 EIF3KP3-201ENST00000514461 639 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 RN7SKP5-201ENST00000517045 272 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AC092709.1-201ENST00000521355 1045 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AC233702.9-201ENST00000581528 203 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 RN7SL435P-201ENST00000584418 282 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AL589765.6-201ENST00000601909 549 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AC005899.6-201ENST00000620729 297 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AL122023.1-201ENST00000622847 530 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 AC027279.1-201ENST00000568885 4284 ntBASIC4.22□□□□□ -1.73
HLA-DQA1P01909 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DQA1P01909 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms