Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC6.37□□□□□ -1.39
BDNFP23560 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
BDNFP23560 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
BDNFP23560 AL451142.1-201ENST00000375867 775 ntBASIC6.37□□□□□ -1.39
BDNFP23560 RNU1-74P-201ENST00000384108 171 ntBASIC6.37□□□□□ -1.39
BDNFP23560 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC6.37□□□□□ -1.39
BDNFP23560 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC6.37□□□□□ -1.39
BDNFP23560 RPS3P2-201ENST00000421346 701 ntBASIC6.37□□□□□ -1.39
BDNFP23560 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
BDNFP23560 AL445528.1-201ENST00000426330 420 ntBASIC6.37□□□□□ -1.39
BDNFP23560 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.37□□□□□ -1.39
BDNFP23560 AL389925.1-201ENST00000432257 728 ntBASIC6.37□□□□□ -1.39
BDNFP23560 NDUFS5P5-201ENST00000437256 321 ntBASIC6.37□□□□□ -1.39
BDNFP23560 CACYBPP1-201ENST00000438592 684 ntBASIC6.37□□□□□ -1.39
BDNFP23560 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.37□□□□□ -1.39
BDNFP23560 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.37□□□□□ -1.39
BDNFP23560 AC015983.1-201ENST00000441577 373 ntBASIC6.37□□□□□ -1.39
BDNFP23560 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
BDNFP23560 MORF4L1P4-201ENST00000450245 976 ntBASIC6.37□□□□□ -1.39
BDNFP23560 RAB28P2-201ENST00000454299 641 ntBASIC6.37□□□□□ -1.39
BDNFP23560 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.37□□□□□ -1.39
BDNFP23560 ACA64.1-201ENST00000459171 127 ntBASIC6.37□□□□□ -1.39
BDNFP23560 RN7SL352P-201ENST00000466002 277 ntBASIC6.37□□□□□ -1.39
BDNFP23560 HMGB1P47-201ENST00000511281 589 ntBASIC6.37□□□□□ -1.39
BDNFP23560 SCARNA18.1-201ENST00000516330 83 ntBASIC6.37□□□□□ -1.39
BDNFP23560 RNU6-751P-201ENST00000516382 101 ntBASIC6.37□□□□□ -1.39
BDNFP23560 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC6.37□□□□□ -1.39
BDNFP23560 TPM3P3-201ENST00000521343 354 ntBASIC6.37□□□□□ -1.39
BDNFP23560 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
BDNFP23560 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
BDNFP23560 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
BDNFP23560 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC6.37□□□□□ -1.39
BDNFP23560 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.37□□□□□ -1.39
BDNFP23560 AC124856.1-201ENST00000600819 896 ntBASIC6.37□□□□□ -1.39
BDNFP23560 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC6.37□□□□□ -1.39
BDNFP23560 AC100814.1-201ENST00000606963 623 ntBASIC6.37□□□□□ -1.39
BDNFP23560 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC6.37□□□□□ -1.39
BDNFP23560 SNX18P12-201ENST00000624821 759 ntBASIC6.37□□□□□ -1.39
BDNFP23560 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC6.37□□□□□ -1.39
BDNFP23560 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC6.37□□□□□ -1.39
BDNFP23560 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.37□□□□□ -1.39
BDNFP23560 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
BDNFP23560 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
BDNFP23560 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
BDNFP23560 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.37□□□□□ -1.39
BDNFP23560 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
BDNFP23560 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.37□□□□□ -1.39
BDNFP23560 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.36□□□□□ -1.39
BDNFP23560 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
BDNFP23560 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
BDNFP23560 AC091305.2-201ENST00000624049 1576 ntBASIC6.36□□□□□ -1.39
BDNFP23560 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
BDNFP23560 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
BDNFP23560 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
BDNFP23560 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
BDNFP23560 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
BDNFP23560 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
BDNFP23560 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.36□□□□□ -1.39
BDNFP23560 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.36□□□□□ -1.39
BDNFP23560 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC6.36□□□□□ -1.39
BDNFP23560 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.36□□□□□ -1.39
BDNFP23560 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC6.36□□□□□ -1.39
BDNFP23560 NPM1P40-201ENST00000412758 733 ntBASIC6.36□□□□□ -1.39
BDNFP23560 SLC20A1P1-201ENST00000413906 956 ntBASIC6.36□□□□□ -1.39
BDNFP23560 PTCD2P2-201ENST00000415579 1095 ntBASIC6.36□□□□□ -1.39
BDNFP23560 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.36□□□□□ -1.39
BDNFP23560 NMD3P2-201ENST00000421815 761 ntBASIC6.36□□□□□ -1.39
BDNFP23560 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC6.36□□□□□ -1.39
BDNFP23560 AL356806.1-201ENST00000422524 916 ntBASIC6.36□□□□□ -1.39
BDNFP23560 AC006065.1-201ENST00000422539 802 ntBASIC6.36□□□□□ -1.39
BDNFP23560 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC6.36□□□□□ -1.39
BDNFP23560 AC245884.2-201ENST00000426257 404 ntBASIC6.36□□□□□ -1.39
BDNFP23560 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.36□□□□□ -1.39
BDNFP23560 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
BDNFP23560 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC6.36□□□□□ -1.39
BDNFP23560 AL606490.8-201ENST00000441624 319 ntBASIC6.36□□□□□ -1.39
BDNFP23560 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC6.36□□□□□ -1.39
BDNFP23560 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.36□□□□□ -1.39
BDNFP23560 RPL5P13-201ENST00000462840 709 ntBASIC6.36□□□□□ -1.39
BDNFP23560 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
BDNFP23560 AC073610.1-201ENST00000489971 396 ntBASIC6.36□□□□□ -1.39
BDNFP23560 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
BDNFP23560 WBP1LP3-201ENST00000523033 208 ntBASIC6.36□□□□□ -1.39
BDNFP23560 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.36□□□□□ -1.39
BDNFP23560 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC6.36□□□□□ -1.39
BDNFP23560 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC6.36□□□□□ -1.39
BDNFP23560 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC6.36□□□□□ -1.39
BDNFP23560 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC6.36□□□□□ -1.39
BDNFP23560 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC6.36□□□□□ -1.39
BDNFP23560 AL021918.2-201ENST00000613415 194 ntBASIC6.36□□□□□ -1.39
BDNFP23560 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.36□□□□□ -1.39
BDNFP23560 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.36□□□□□ -1.39
BDNFP23560 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
BDNFP23560 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.36□□□□□ -1.39
BDNFP23560 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC6.36□□□□□ -1.39
BDNFP23560 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
BDNFP23560 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
BDNFP23560 MRRFP1-201ENST00000435941 1675 ntBASIC6.36□□□□□ -1.39
BDNFP23560 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
BDNFP23560 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms