RNA–Protein interactions for RNA: ENST00000536742.5

CCDC60-203, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC60, Length 886 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-203ENST00000536742 AEBP2Q6ZN18 517 aaPredicted RBP30.03■■■□□ 2.4
CCDC60-203ENST00000536742 CHIC1Q5VXU3 224 aa28.91■■■□□ 2.22
CCDC60-203ENST00000536742 SENP3Q9H4L4 574 aaPredicted RBP25.68■■□□□ 1.7
CCDC60-203ENST00000536742 PHF23Q9BUL5 403 aaPredicted RBP25.37■■□□□ 1.65
CCDC60-203ENST00000536742 FOXD1Q16676 465 aa23.83■■□□□ 1.41
CCDC60-203ENST00000536742 PLPPR3Q6T4P5 718 aa23.32■■□□□ 1.32
CCDC60-203ENST00000536742 ADRA2BP18089 450 aa22.51■■□□□ 1.19
CCDC60-203ENST00000536742 PPP6R1Q9UPN7 881 aa22.51■■□□□ 1.19
CCDC60-203ENST00000536742 PIAS4Q8N2W9 510 aaPredicted RBP22.41■■□□□ 1.18
CCDC60-203ENST00000536742 MSH5O43196 834 aa22.24■■□□□ 1.15
CCDC60-203ENST00000536742 POTEDQ86YR6 584 aa21.05■□□□□ 0.96
CCDC60-203ENST00000536742 SCAF1Q9H7N4 1312 aaKnown RBP20.74■□□□□ 0.91
CCDC60-203ENST00000536742 MAPK8IP2Q13387 824 aaPredicted RBP20.56■□□□□ 0.88
CCDC60-203ENST00000536742 PPP4R3CPQ6ZMV5 832 aa20.47■□□□□ 0.87
CCDC60-203ENST00000536742 DMRT2Q9Y5R5 561 aa20.38■□□□□ 0.85
CCDC60-203ENST00000536742 CNKSR2Q8WXI2 1034 aa20.02■□□□□ 0.8
CCDC60-203ENST00000536742 NCBP3Q53F19 620 aaKnown RBP19.88■□□□□ 0.77
CCDC60-203ENST00000536742 HOXD11P31277 338 aaPredicted RBP19.75■□□□□ 0.75
CCDC60-203ENST00000536742 RNF216Q9NWF9 866 aaPredicted RBP19.73■□□□□ 0.75
CCDC60-203ENST00000536742 DCAF8L1A6NGE4 600 aa19.64■□□□□ 0.73
CCDC60-203ENST00000536742 NPM3O75607 178 aaKnown RBP19.46■□□□□ 0.71
CCDC60-203ENST00000536742 KCNA4P22459 653 aa19.4■□□□□ 0.7
CCDC60-203ENST00000536742 DNAJC5BQ9UF47 199 aa19.02■□□□□ 0.64
CCDC60-203ENST00000536742 RNF39Q9H2S5 420 aa18.95■□□□□ 0.62
CCDC60-203ENST00000536742 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.93■□□□□ 0.62
CCDC60-203ENST00000536742 CACNB1Q02641 598 aaPredicted RBP18.9■□□□□ 0.62
CCDC60-203ENST00000536742 C1QBPQ07021 282 aaKnown RBP18.75■□□□□ 0.59
CCDC60-203ENST00000536742 SLC4A1APQ9BWU0 796 aaKnown RBP18.55■□□□□ 0.56
CCDC60-203ENST00000536742 SLC4A2P04920 1241 aa18.46■□□□□ 0.55
CCDC60-203ENST00000536742 U3KPZ7 1027 aaPredicted RBP18.46■□□□□ 0.55
CCDC60-203ENST00000536742 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.19■□□□□ 0.5
CCDC60-203ENST00000536742 HNRNPUL2Q1KMD3 747 aaKnown RBP18.19■□□□□ 0.5
CCDC60-203ENST00000536742 EHMT2Q96KQ7 1210 aa18.19■□□□□ 0.5
CCDC60-203ENST00000536742 CAPN15O75808 1086 aa18.14■□□□□ 0.49
CCDC60-203ENST00000536742 APLP2Q06481 763 aa18.14■□□□□ 0.49
CCDC60-203ENST00000536742 SPINK5Q9NQ38 1064 aaPredicted RBP18.1■□□□□ 0.49
CCDC60-203ENST00000536742 SAMD1Q6SPF0 538 aaPredicted RBP18.07■□□□□ 0.48
CCDC60-203ENST00000536742 MYCNP04198 464 aaPredicted RBP18.05■□□□□ 0.48
CCDC60-203ENST00000536742 FOXD4L1Q9NU39 408 aa18.03■□□□□ 0.48
CCDC60-203ENST00000536742 TRHP20396 242 aaPredicted RBP17.93■□□□□ 0.46
CCDC60-203ENST00000536742 CSRNP3Q8WYN3 585 aa17.93■□□□□ 0.46
CCDC60-203ENST00000536742 ZNF219Q9P2Y4 722 aaPredicted RBP17.91■□□□□ 0.46
CCDC60-203ENST00000536742 DSG3P32926 999 aa17.86■□□□□ 0.45
CCDC60-203ENST00000536742 ZBTB22O15209 634 aa17.78■□□□□ 0.44
CCDC60-203ENST00000536742 ABCB7O75027 752 aa17.71■□□□□ 0.43
CCDC60-203ENST00000536742 ATF5Q9Y2D1 282 aaPredicted RBP17.52■□□□□ 0.4
CCDC60-203ENST00000536742 POLA2Q14181 598 aa17.5■□□□□ 0.39
CCDC60-203ENST00000536742 ATXN8OSP0DMR3 200 aa17.47■□□□□ 0.39
CCDC60-203ENST00000536742 ZBTB12Q9Y330 459 aaPredicted RBP17.22■□□□□ 0.35
CCDC60-203ENST00000536742 RBM42Q9BTD8 480 aaKnown RBP17.13■□□□□ 0.33
CCDC60-203ENST00000536742 FBLN2P98095 1184 aa16.97■□□□□ 0.31
CCDC60-203ENST00000536742 OSCARQ8IYS5 282 aa16.9■□□□□ 0.3
CCDC60-203ENST00000536742 AKT1S1Q96B36 256 aa16.78■□□□□ 0.28
CCDC60-203ENST00000536742 MKRN4PQ13434 485 aaPredicted RBP16.72■□□□□ 0.27
CCDC60-203ENST00000536742 SPDYE2BA6NHP3 402 aa16.68■□□□□ 0.26
CCDC60-203ENST00000536742 SPDYE6P0CI01 402 aa16.68■□□□□ 0.26
CCDC60-203ENST00000536742 SPDYE2Q495Y8 402 aa16.68■□□□□ 0.26
CCDC60-203ENST00000536742 REM2Q8IYK8 340 aaPredicted RBP16.6■□□□□ 0.25
CCDC60-203ENST00000536742 NISCHQ9Y2I1 1504 aa16.6■□□□□ 0.25
CCDC60-203ENST00000536742 POTEHQ6S545 545 aa16.59■□□□□ 0.25
CCDC60-203ENST00000536742 CHRDL2Q6WN34 429 aa16.57■□□□□ 0.24
CCDC60-203ENST00000536742 ZNF692Q9BU19 519 aaPredicted RBP16.57■□□□□ 0.24
CCDC60-203ENST00000536742 ABCC9O60706 1549 aa16.48■□□□□ 0.23
CCDC60-203ENST00000536742 SSUH2Q9Y2M2 353 aa16.43■□□□□ 0.22
CCDC60-203ENST00000536742 PITPNM1O00562 1244 aa16.4■□□□□ 0.22
CCDC60-203ENST00000536742 SPDYE1Q8NFV5 336 aaPredicted RBP16.33■□□□□ 0.2
CCDC60-203ENST00000536742 PABPN1Q86U42 306 aaKnown RBP eCLIP16.3■□□□□ 0.2
CCDC60-203ENST00000536742 CLEC11AQ9Y240 323 aa16.3■□□□□ 0.2
CCDC60-203ENST00000536742 SPDYE4A6NLX3 237 aa16.22■□□□□ 0.19
CCDC60-203ENST00000536742 PIP4P2Q8N4L2 257 aa16.22■□□□□ 0.19
CCDC60-203ENST00000536742 FKBP8Q14318 412 aa16.2■□□□□ 0.18
CCDC60-203ENST00000536742 FXR2P51116 673 aaKnown RBP eCLIP16.18■□□□□ 0.18
CCDC60-203ENST00000536742 PRR29P0C7W0 189 aa16.08■□□□□ 0.16
CCDC60-203ENST00000536742 DNAJC5Q9H3Z4 198 aa16.07■□□□□ 0.16
CCDC60-203ENST00000536742 PRKAR2AP13861 404 aaKnown RBP16.02■□□□□ 0.16
CCDC60-203ENST00000536742 STAG3Q9UJ98 1225 aa15.99■□□□□ 0.15
CCDC60-203ENST00000536742 HAX1O00165 279 aa15.93■□□□□ 0.14
CCDC60-203ENST00000536742 CHADLQ6NUI6 762 aa15.88■□□□□ 0.13
CCDC60-203ENST00000536742 PROM2Q8N271 834 aa15.83■□□□□ 0.12
CCDC60-203ENST00000536742 FBXO3Q9UK99 471 aa15.74■□□□□ 0.11
CCDC60-203ENST00000536742 SP7Q8TDD2 431 aaPredicted RBP15.73■□□□□ 0.11
CCDC60-203ENST00000536742 FARP1Q9Y4F1 1045 aaPredicted RBP15.7■□□□□ 0.1
CCDC60-203ENST00000536742 CREBZFQ9NS37 354 aa15.67■□□□□ 0.1
CCDC60-203ENST00000536742 C19orf67A6NJJ6 358 aa15.65■□□□□ 0.1
CCDC60-203ENST00000536742 EVX2Q03828 476 aa15.61■□□□□ 0.09
CCDC60-203ENST00000536742 CD44P16070 742 aaKnown RBP15.54■□□□□ 0.08
CCDC60-203ENST00000536742 PLEKHG5O94827 1062 aa15.52■□□□□ 0.08
CCDC60-203ENST00000536742 NPM1P06748 294 aaKnown RBP eCLIP15.52■□□□□ 0.08
CCDC60-203ENST00000536742 MIER1Q8N108 512 aa15.48■□□□□ 0.07
CCDC60-203ENST00000536742 CCDC180Q9P1Z9 1646 aa15.43■□□□□ 0.06
CCDC60-203ENST00000536742 PLCD3Q8N3E9 789 aa15.42■□□□□ 0.06
CCDC60-203ENST00000536742 PAK3O75914 559 aaPredicted RBP15.41■□□□□ 0.06
CCDC60-203ENST00000536742 MNX1P50219 401 aaPredicted RBP15.4■□□□□ 0.06
CCDC60-203ENST00000536742 VASPP50552 380 aaPredicted RBP15.4■□□□□ 0.06
CCDC60-203ENST00000536742 ZRANB1Q9UGI0 708 aa15.38■□□□□ 0.05
CCDC60-203ENST00000536742 GABBR2O75899 941 aa15.35■□□□□ 0.05
CCDC60-203ENST00000536742 AMER1Q5JTC6 1135 aaPredicted RBP15.35■□□□□ 0.05
CCDC60-203ENST00000536742 CLCN6P51797 869 aa15.31■□□□□ 0.04
CCDC60-203ENST00000536742 ZBTB47Q9UFB7 747 aaPredicted RBP15.29■□□□□ 0.04
CCDC60-203ENST00000536742 ZNF579Q8NAF0 562 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms