Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL135978.1-201ENST00000553618 1266 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 AC010525.2-201ENST00000590920 195 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 NDUFB9P1-201ENST00000604683 510 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC8.35□□□□□ -1.07
COL9A1P20849 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 CELF2-212ENST00000632728 3827 ntAPPRIS P3 TSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 STRADA-246ENST00000640397 1045 ntTSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 TNFSF15-202ENST00000374045 6687 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 MORF4L2-201ENST00000360458 1824 ntAPPRIS P1 TSL 2 BASIC8.35□□□□□ -1.07
COL9A1P20849 CD164-201ENST00000275080 2954 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 KIF23-201ENST00000260363 3713 ntAPPRIS P4 TSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 ZNF778-201ENST00000306502 2386 ntTSL 2 BASIC8.35□□□□□ -1.07
COL9A1P20849 LINC01484-203ENST00000521128 2361 ntTSL 2 BASIC8.35□□□□□ -1.07
COL9A1P20849 SMARCA1-202ENST00000371122 4099 ntAPPRIS P3 TSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 DYNC2LI1-203ENST00000398823 2903 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 MYT1L-202ENST00000399161 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 SH3YL1-229ENST00000626873 1973 ntTSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 MTRR-201ENST00000264668 3274 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 YY1AP1-203ENST00000347088 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 NQO1-203ENST00000379047 2527 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 ATMIN-206ENST00000566488 5343 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 LINC01347-202ENST00000627498 3841 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 FLNB-212ENST00000490882 8079 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 HAPLN1-201ENST00000274341 5607 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 MCM3-207ENST00000616552 3208 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 NAA16-201ENST00000379406 4347 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 DST-206ENST00000370788 17657 ntAPPRIS ALT2 TSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 MOV10L1-209ENST00000540615 3941 ntAPPRIS ALT2 TSL 2 BASIC8.35□□□□□ -1.07
COL9A1P20849 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
COL9A1P20849 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC8.34□□□□□ -1.07
COL9A1P20849 MTIF2-203ENST00000394600 2221 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
COL9A1P20849 DEPDC5-204ENST00000400246 5551 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 TBX5-AS1-201ENST00000528549 3620 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC8.34□□□□□ -1.07
COL9A1P20849 FADS1-211ENST00000536991 2701 ntTSL 2 BASIC8.34□□□□□ -1.07
COL9A1P20849 CS-212ENST00000548567 3057 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 AC022182.3-201ENST00000529239 2167 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 RPS20-205ENST00000519807 1826 ntTSL 2 BASIC8.34□□□□□ -1.07
COL9A1P20849 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
COL9A1P20849 Y_RNA.231-201ENST00000364358 102 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 Y_RNA.257-201ENST00000364596 102 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 SUGT1P1-201ENST00000379514 476 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 AL589647.1-201ENST00000402485 466 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 NFIA-208ENST00000407417 2123 ntTSL 2 BASIC8.34□□□□□ -1.07
COL9A1P20849 AC068138.1-201ENST00000412635 217 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 RPLP1P10-201ENST00000413972 339 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC8.34□□□□□ -1.07
COL9A1P20849 AL031848.1-201ENST00000419034 351 ntTSL 5 BASIC8.34□□□□□ -1.07
COL9A1P20849 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC8.34□□□□□ -1.07
COL9A1P20849 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC8.34□□□□□ -1.07
COL9A1P20849 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC8.34□□□□□ -1.07
COL9A1P20849 AC073900.1-201ENST00000429766 776 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 WDR82P1-201ENST00000439836 939 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC8.34□□□□□ -1.07
COL9A1P20849 AC012501.1-201ENST00000454312 555 ntTSL 4 BASIC8.34□□□□□ -1.07
COL9A1P20849 BX248409.1-201ENST00000455497 255 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 RPSAP48-201ENST00000466509 889 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 RN7SL456P-201ENST00000469290 295 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 AC024558.1-201ENST00000505008 528 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 RNU6-1308P-201ENST00000516817 103 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 AC009902.1-201ENST00000519351 183 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 AP002404.1-201ENST00000532005 451 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC8.34□□□□□ -1.07
COL9A1P20849 AL163153.1-201ENST00000554223 283 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC8.34□□□□□ -1.07
COL9A1P20849 AC126323.4-201ENST00000566935 234 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 ZNF730-201ENST00000593635 464 ntTSL 3 BASIC8.34□□□□□ -1.07
COL9A1P20849 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC8.34□□□□□ -1.07
COL9A1P20849 AC007938.3-201ENST00000604965 623 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 U6.107-201ENST00000637108 79 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 FNDC3A-206ENST00000541916 6328 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 CD36-214ENST00000447544 2298 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
COL9A1P20849 TDG-202ENST00000392872 3251 ntAPPRIS P2 TSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 ECI2-204ENST00000380125 1405 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 MSS51-201ENST00000299432 2421 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 SPATA13-201ENST00000343003 6405 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
COL9A1P20849 AC074281.1-201ENST00000436419 2081 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 EXOC7-220ENST00000607838 3353 ntTSL 5 BASIC8.34□□□□□ -1.07
COL9A1P20849 RBFOX2-207ENST00000414461 1706 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 AL133320.1-201ENST00000621423 2352 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 PRR27-202ENST00000502294 3007 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 LINC00284-202ENST00000439707 2521 ntTSL 5 BASIC8.34□□□□□ -1.07
COL9A1P20849 MCM8-203ENST00000378886 3835 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 AP005264.8-201ENST00000623093 3313 ntBASIC8.34□□□□□ -1.07
COL9A1P20849 ASCC1-202ENST00000317168 2002 ntAPPRIS P1 TSL 2 BASIC8.34□□□□□ -1.07
COL9A1P20849 CLUHP3-206ENST00000562354 4117 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
COL9A1P20849 LOXHD1-212ENST00000582408 3755 ntTSL 2 BASIC8.34□□□□□ -1.08
COL9A1P20849 VEZF1P1-201ENST00000423931 1541 ntBASIC8.34□□□□□ -1.08
COL9A1P20849 CCDC129-202ENST00000407970 3269 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.08
COL9A1P20849 SLC36A3-201ENST00000335230 2456 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.08
COL9A1P20849 AMPD3-208ENST00000528723 2753 ntTSL 2 BASIC8.33□□□□□ -1.08
COL9A1P20849 NIM1K-204ENST00000512796 2929 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
COL9A1P20849 RFT1-201ENST00000296292 5108 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms