Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC5.55□□□□□ -1.52
COL6A3P12111 CFHR5-201ENST00000256785 2810 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 AC013268.3-201ENST00000262716 2324 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 CSMD1-202ENST00000400186 10938 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
COL6A3P12111 CSMD1-217ENST00000602723 10938 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
COL6A3P12111 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.55□□□□□ -1.52
COL6A3P12111 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC5.55□□□□□ -1.52
COL6A3P12111 UBN2-201ENST00000473989 14444 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
COL6A3P12111 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.55□□□□□ -1.52
COL6A3P12111 PCDHB1-201ENST00000306549 8210 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
COL6A3P12111 AC007614.5-201ENST00000623424 8892 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 DEPDC5-202ENST00000382112 5363 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 DCAF7-205ENST00000614556 6340 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 BCORL1-205ENST00000540052 7127 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 SERPINA10-201ENST00000261994 4978 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 AL121657.1-201ENST00000327215 531 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 HMGB3P7-201ENST00000400214 611 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 HSPA8P15-201ENST00000401676 786 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 MRPL35P2-201ENST00000448009 511 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.55□□□□□ -1.52
COL6A3P12111 OR5M2P-201ENST00000529003 936 ntBASIC5.55□□□□□ -1.52
COL6A3P12111 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL6A3P12111 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 USP14-201ENST00000261601 4921 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.54□□□□□ -1.52
COL6A3P12111 LCT-201ENST00000264162 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 AL034549.2-201ENST00000618285 3373 ntBASIC5.54□□□□□ -1.52
COL6A3P12111 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
COL6A3P12111 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC5.54□□□□□ -1.52
COL6A3P12111 PARN-201ENST00000341484 2100 ntTSL 2 BASIC5.54□□□□□ -1.52
COL6A3P12111 MIR129-1-201ENST00000384972 72 ntBASIC5.54□□□□□ -1.52
COL6A3P12111 BOLA3P4-201ENST00000418151 400 ntBASIC5.54□□□□□ -1.52
COL6A3P12111 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC5.54□□□□□ -1.52
COL6A3P12111 ZNF207-207ENST00000577908 4672 ntAPPRIS ALT1 TSL 5 BASIC5.54□□□□□ -1.52
COL6A3P12111 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 VN1R92P-201ENST00000598511 928 ntBASIC5.54□□□□□ -1.52
COL6A3P12111 AC011379.1-201ENST00000508713 3025 ntBASIC5.54□□□□□ -1.52
COL6A3P12111 GALR1-201ENST00000299727 10044 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 DDX10-203ENST00000526794 6707 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
COL6A3P12111 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC5.54□□□□□ -1.52
COL6A3P12111 ACOT11-202ENST00000371316 6369 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 PAICS-207ENST00000512576 6480 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.54□□□□□ -1.52
COL6A3P12111 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
COL6A3P12111 AC006213.6-201ENST00000623722 4179 ntBASIC5.54□□□□□ -1.52
COL6A3P12111 ASPM-203ENST00000367409 10887 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 GAPDHP49-201ENST00000421421 961 ntBASIC5.54□□□□□ -1.52
COL6A3P12111 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC5.54□□□□□ -1.52
COL6A3P12111 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.54□□□□□ -1.52
COL6A3P12111 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.54□□□□□ -1.52
COL6A3P12111 GAPDHP56-201ENST00000506031 988 ntBASIC5.54□□□□□ -1.52
COL6A3P12111 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 AC139697.1-201ENST00000548429 745 ntBASIC5.54□□□□□ -1.52
COL6A3P12111 RPL12P25-202ENST00000598100 674 ntBASIC5.54□□□□□ -1.52
COL6A3P12111 AC090948.2-201ENST00000607363 564 ntBASIC5.54□□□□□ -1.52
COL6A3P12111 CC2D2A-202ENST00000424120 5249 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
COL6A3P12111 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.54□□□□□ -1.52
COL6A3P12111 EMP1-201ENST00000256951 5921 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 LCORL-207ENST00000635767 10430 ntTSL 5 BASIC5.54□□□□□ -1.52
COL6A3P12111 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL6A3P12111 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
COL6A3P12111 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 OR1D2-202ENST00000641064 4882 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL6A3P12111 Y_RNA.111-201ENST00000363248 100 ntBASIC5.53□□□□□ -1.52
COL6A3P12111 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC5.53□□□□□ -1.52
COL6A3P12111 PRPF38AP1-201ENST00000451976 933 ntBASIC5.53□□□□□ -1.52
COL6A3P12111 AL356390.1-201ENST00000455684 397 ntBASIC5.53□□□□□ -1.52
COL6A3P12111 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 AP001880.2-201ENST00000538233 448 ntBASIC5.53□□□□□ -1.52
COL6A3P12111 AC005377.1-201ENST00000605126 456 ntBASIC5.53□□□□□ -1.52
COL6A3P12111 CHIC1-202ENST00000373504 6797 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
COL6A3P12111 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC5.53□□□□□ -1.52
COL6A3P12111 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.53□□□□□ -1.52
COL6A3P12111 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 SPTAN1-223ENST00000630866 7498 ntTSL 5 BASIC5.53□□□□□ -1.52
COL6A3P12111 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.53□□□□□ -1.52
COL6A3P12111 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.53□□□□□ -1.52
COL6A3P12111 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.53□□□□□ -1.52
COL6A3P12111 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 DPPA3P2-202ENST00000557188 1219 ntBASIC5.53□□□□□ -1.52
COL6A3P12111 DIDO1-206ENST00000395340 7551 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
COL6A3P12111 LINC00654-201ENST00000379053 6113 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL6A3P12111 SLFN13-211ENST00000542635 5921 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 141.5 ms