RNA–Protein interactions for RNA: ENST00000630866.1

SPTAN1-223, Transcript of spectrin alpha, non-erythrocytic 1, human

TSL 5 BASIC

Gene SPTAN1, Length 7,498 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPTAN1-223	ENST00000630866	DCAF8L2	P0C7V8	631 aa		15.48	■□□□□ 0.07
SPTAN1-223	ENST00000630866	NISCH	Q9Y2I1	1504 aa		14.42	□□□□□ -0.1
SPTAN1-223	ENST00000630866	SUPT5H	O00267	1087 aa	Known RBP	14.21	□□□□□ -0.13
SPTAN1-223	ENST00000630866	SHROOM4	Q9ULL8	1493 aa		14.05	□□□□□ -0.16
SPTAN1-223	ENST00000630866	FAM9A	Q8IZU1	332 aa	Predicted RBP	13.87	□□□□□ -0.19
SPTAN1-223	ENST00000630866	EHMT2	Q96KQ7	1210 aa		13.86	□□□□□ -0.19
SPTAN1-223	ENST00000630866	APLP2	Q06481	763 aa		13.71	□□□□□ -0.21
SPTAN1-223	ENST00000630866	PELP1	Q8IZL8	1130 aa	Known RBP	13.62	□□□□□ -0.23
SPTAN1-223	ENST00000630866	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.41	□□□□□ -0.26
SPTAN1-223	ENST00000630866	RANGAP1	P46060	587 aa	Predicted RBP	13.4	□□□□□ -0.26
SPTAN1-223	ENST00000630866	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.32	□□□□□ -0.28
SPTAN1-223	ENST00000630866	TRIM41	Q8WV44	630 aa		13.21	□□□□□ -0.29
SPTAN1-223	ENST00000630866	UBTF	P17480	764 aa	Known RBP	13.17	□□□□□ -0.3
SPTAN1-223	ENST00000630866	ERICH6	Q7L0X2	663 aa		13.12	□□□□□ -0.31
SPTAN1-223	ENST00000630866	MYT1L	Q9UL68	1186 aa		13.11	□□□□□ -0.31
SPTAN1-223	ENST00000630866	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.02	□□□□□ -0.32
SPTAN1-223	ENST00000630866	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.02	□□□□□ -0.32
SPTAN1-223	ENST00000630866	CCER1	Q8TC90	406 aa	Predicted RBP	12.99	□□□□□ -0.33
SPTAN1-223	ENST00000630866	PCGF6	Q9BYE7	350 aa		12.99	□□□□□ -0.33
SPTAN1-223	ENST00000630866	ABCC9	O60706	1549 aa		12.9	□□□□□ -0.34
SPTAN1-223	ENST00000630866	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.83	□□□□□ -0.35
SPTAN1-223	ENST00000630866	CHIC1	Q5VXU3	224 aa		12.8	□□□□□ -0.36
SPTAN1-223	ENST00000630866	ITGAE	P38570	1179 aa		12.71	□□□□□ -0.37
SPTAN1-223	ENST00000630866	ZEB1	P37275	1124 aa	Predicted RBP	12.68	□□□□□ -0.38
SPTAN1-223	ENST00000630866	PPARGC1B	Q86YN6	1023 aa	Known RBP	12.67	□□□□□ -0.38
SPTAN1-223	ENST00000630866	MYT1	Q01538	1121 aa		12.67	□□□□□ -0.38
SPTAN1-223	ENST00000630866	FBLN2	P98095	1184 aa		12.65	□□□□□ -0.38
SPTAN1-223	ENST00000630866	POLR3GL	Q9BT43	218 aa		12.64	□□□□□ -0.39
SPTAN1-223	ENST00000630866	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.6	□□□□□ -0.39
SPTAN1-223	ENST00000630866	CENPB	P07199	599 aa	Predicted RBP	12.58	□□□□□ -0.4
SPTAN1-223	ENST00000630866	NEFL	P07196	543 aa		12.54	□□□□□ -0.4
SPTAN1-223	ENST00000630866	YTHDC1	Q96MU7	727 aa	Known RBP	12.48	□□□□□ -0.41
SPTAN1-223	ENST00000630866	CNGB1	Q14028	1251 aa	Predicted RBP	12.44	□□□□□ -0.42
SPTAN1-223	ENST00000630866	DAXX	Q9UER7	740 aa	Predicted RBP	12.44	□□□□□ -0.42
SPTAN1-223	ENST00000630866	FAM50A	Q14320	339 aa	Known RBP	12.43	□□□□□ -0.42
SPTAN1-223	ENST00000630866	TRIM52	Q96A61	297 aa		12.39	□□□□□ -0.43
SPTAN1-223	ENST00000630866	BCAN	Q96GW7	911 aa		12.39	□□□□□ -0.43
SPTAN1-223	ENST00000630866	TRIM26	Q12899	539 aa	Predicted RBP	12.36	□□□□□ -0.43
SPTAN1-223	ENST00000630866	LOC105371045	A0A1W2PR82	267 aa		12.35	□□□□□ -0.43
SPTAN1-223	ENST00000630866	ESF1	Q9H501	851 aa	Known RBP	12.33	□□□□□ -0.44
SPTAN1-223	ENST00000630866	NPM1	P06748	294 aa	Known RBP eCLIP	12.31	□□□□□ -0.44
SPTAN1-223	ENST00000630866	ARID3C	A6NKF2	412 aa		12.27	□□□□□ -0.45
SPTAN1-223	ENST00000630866	PLPPR3	Q6T4P5	718 aa		12.24	□□□□□ -0.45
SPTAN1-223	ENST00000630866	P3H3	Q8IVL6	736 aa		12.23	□□□□□ -0.45
SPTAN1-223	ENST00000630866	ZNF326	Q5BKZ1	582 aa	Known RBP	12.21	□□□□□ -0.45
SPTAN1-223	ENST00000630866	SLC24A1	O60721	1099 aa		12.2	□□□□□ -0.46
SPTAN1-223	ENST00000630866	CDK11A	Q9UQ88	783 aa	Predicted RBP	12.2	□□□□□ -0.46
SPTAN1-223	ENST00000630866	SCRIB	Q14160	1630 aa		12.19	□□□□□ -0.46
SPTAN1-223	ENST00000630866	ZNF777	Q9ULD5	760 aa	Predicted RBP	12.19	□□□□□ -0.46
SPTAN1-223	ENST00000630866	NEUROD1	Q13562	356 aa		12.17	□□□□□ -0.46
SPTAN1-223	ENST00000630866	STAG3	Q9UJ98	1225 aa		12.17	□□□□□ -0.46
SPTAN1-223	ENST00000630866	CLSPN	Q9HAW4	1339 aa		12.1	□□□□□ -0.47
SPTAN1-223	ENST00000630866	NEFM	P07197	916 aa		12.1	□□□□□ -0.47
SPTAN1-223	ENST00000630866	CHGA	P10645	457 aa	Known RBP	12.07	□□□□□ -0.48
SPTAN1-223	ENST00000630866	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.06	□□□□□ -0.48
SPTAN1-223	ENST00000630866	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.06	□□□□□ -0.48
SPTAN1-223	ENST00000630866	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.05	□□□□□ -0.48
SPTAN1-223	ENST00000630866	RTL5	Q5HYW3	569 aa	Predicted RBP	12.05	□□□□□ -0.48
SPTAN1-223	ENST00000630866	CSRNP3	Q8WYN3	585 aa		12.03	□□□□□ -0.48
SPTAN1-223	ENST00000630866	HRC	P23327	699 aa		12	□□□□□ -0.49
SPTAN1-223	ENST00000630866	RB1CC1	Q8TDY2	1594 aa		12	□□□□□ -0.49
SPTAN1-223	ENST00000630866	TRH	P20396	242 aa	Predicted RBP	11.99	□□□□□ -0.49
SPTAN1-223	ENST00000630866	ERCC6	Q03468	1493 aa		11.98	□□□□□ -0.49
SPTAN1-223	ENST00000630866	CCDC180	Q9P1Z9	1646 aa		11.95	□□□□□ -0.5
SPTAN1-223	ENST00000630866	BCL11A	Q9H165	835 aa		11.93	□□□□□ -0.5
SPTAN1-223	ENST00000630866	CANX	P27824	592 aa	Known RBP	11.92	□□□□□ -0.5
SPTAN1-223	ENST00000630866	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.92	□□□□□ -0.5	2e-7	■■■□□ 15.9
SPTAN1-223	ENST00000630866	SCAF1	Q9H7N4	1312 aa	Known RBP	11.92	□□□□□ -0.5
SPTAN1-223	ENST00000630866	ANP32C	O43423	234 aa		11.91	□□□□□ -0.5
SPTAN1-223	ENST00000630866		A0A0G2JS52	829 aa		11.89	□□□□□ -0.51
SPTAN1-223	ENST00000630866	TSPY4	P0CV99	314 aa		11.88	□□□□□ -0.51
SPTAN1-223	ENST00000630866	TSPY10	P0CW01	314 aa		11.88	□□□□□ -0.51
SPTAN1-223	ENST00000630866	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.88	□□□□□ -0.51
SPTAN1-223	ENST00000630866	KCNH8	Q96L42	1107 aa		11.86	□□□□□ -0.51
SPTAN1-223	ENST00000630866	DIEXF	Q68CQ4	756 aa	Known RBP	11.85	□□□□□ -0.51
SPTAN1-223	ENST00000630866	AEBP2	Q6ZN18	517 aa	Predicted RBP	11.84	□□□□□ -0.51
SPTAN1-223	ENST00000630866	C14orf37	Q86TY3	774 aa		11.83	□□□□□ -0.52
SPTAN1-223	ENST00000630866	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.82	□□□□□ -0.52
SPTAN1-223	ENST00000630866	PPP1R15A	O75807	674 aa	Predicted RBP	11.81	□□□□□ -0.52
SPTAN1-223	ENST00000630866	CHIC2	Q9UKJ5	165 aa		11.8	□□□□□ -0.52
SPTAN1-223	ENST00000630866	MTUS2	Q5JR59	1369 aa		11.77	□□□□□ -0.52
SPTAN1-223	ENST00000630866	PLEKHD1	A6NEE1	506 aa		11.77	□□□□□ -0.53
SPTAN1-223	ENST00000630866	PLEKHG5	O94827	1062 aa		11.76	□□□□□ -0.53
SPTAN1-223	ENST00000630866	NACAD	O15069	1562 aa		11.76	□□□□□ -0.53
SPTAN1-223	ENST00000630866	HAP1	P54257	671 aa	Predicted RBP	11.75	□□□□□ -0.53
SPTAN1-223	ENST00000630866	TONSL	Q96HA7	1378 aa		11.75	□□□□□ -0.53
SPTAN1-223	ENST00000630866	NPM2	Q86SE8	214 aa	Known RBP	11.74	□□□□□ -0.53
SPTAN1-223	ENST00000630866	SENP3	Q9H4L4	574 aa	Predicted RBP	11.74	□□□□□ -0.53
SPTAN1-223	ENST00000630866	ZBTB7C	A1YPR0	619 aa		11.74	□□□□□ -0.53
SPTAN1-223	ENST00000630866	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.74	□□□□□ -0.53
SPTAN1-223	ENST00000630866	KDM2A	Q9Y2K7	1162 aa		11.71	□□□□□ -0.54
SPTAN1-223	ENST00000630866	NCBP3	Q53F19	620 aa	Known RBP	11.67	□□□□□ -0.54
SPTAN1-223	ENST00000630866	RSF1	Q96T23	1441 aa	Predicted RBP	11.62	□□□□□ -0.55
SPTAN1-223	ENST00000630866	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.6	□□□□□ -0.55
SPTAN1-223	ENST00000630866	RRP7BP	Q9NSQ0	103 aa		11.59	□□□□□ -0.55
SPTAN1-223	ENST00000630866	WDR43	Q15061	677 aa	Known RBP eCLIP	11.59	□□□□□ -0.55	2e-6	■■■□□ 18.6
SPTAN1-223	ENST00000630866	GLIPR1L2	Q4G1C9	344 aa		11.59	□□□□□ -0.55
SPTAN1-223	ENST00000630866	EIF5B	O60841	1220 aa	Known RBP	11.58	□□□□□ -0.56
SPTAN1-223	ENST00000630866	LMOD2	Q6P5Q4	547 aa		11.58	□□□□□ -0.56
SPTAN1-223	ENST00000630866	TMC1	Q8TDI8	760 aa		11.57	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms