Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 FITM1-202ENST00000559294 800 ntBASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 AL121906.2-201ENST00000621597 723 ntBASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 KRT8P36-201ENST00000489121 1440 ntBASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 DECR2-212ENST00000627716 352 ntTSL 2 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 MMP23A-201ENST00000234610 1017 ntBASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 NT5C-211ENST00000582170 653 ntTSL 3 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 BID-212ENST00000614949 1988 ntTSL 5 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 F2R-202ENST00000505600 442 ntTSL 2 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 AC026271.3-201ENST00000571884 352 ntBASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 AP000525.1-201ENST00000608286 694 ntBASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NOTCH3Q9UM47 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 AL391422.3-201ENST00000603791 2761 ntBASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 KSR1P1-201ENST00000446298 240 ntBASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC15.14■□□□□ 0.01
NOTCH3Q9UM47 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
NOTCH3Q9UM47 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms