Protein–RNA interactions for Protein: Q9H4D5

NXF3, Nuclear RNA export factor 3, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NXF3Q9H4D5 AP001271.2-201ENST00000624018 1556 ntBASIC21.29■■□□□ 1
NXF3Q9H4D5 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.29■■□□□ 1
NXF3Q9H4D5 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.29■■□□□ 1
NXF3Q9H4D5 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.29■■□□□ 1
NXF3Q9H4D5 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.29■■□□□ 1
NXF3Q9H4D5 LINC01023-201ENST00000606054 436 ntBASIC21.29■■□□□ 1
NXF3Q9H4D5 AP000525.1-201ENST00000608286 694 ntBASIC21.29■■□□□ 1
NXF3Q9H4D5 AL445675.2-201ENST00000620291 557 ntBASIC21.29■■□□□ 1
NXF3Q9H4D5 ABBA01031674.1-201ENST00000635145 728 ntBASIC21.29■■□□□ 1
NXF3Q9H4D5 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NXF3Q9H4D5 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NXF3Q9H4D5 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
NXF3Q9H4D5 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.28■■□□□ 1
NXF3Q9H4D5 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
NXF3Q9H4D5 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NXF3Q9H4D5 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.28■■□□□ 1
NXF3Q9H4D5 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.28■■□□□ 1
NXF3Q9H4D5 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
NXF3Q9H4D5 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.28■■□□□ 1
NXF3Q9H4D5 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.28■■□□□ 1
NXF3Q9H4D5 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.28■■□□□ 1
NXF3Q9H4D5 LINC01006-201ENST00000333319 2292 ntBASIC21.28■■□□□ 1
NXF3Q9H4D5 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.28■■□□□ 1
NXF3Q9H4D5 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.28■■□□□ 1
NXF3Q9H4D5 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NXF3Q9H4D5 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NXF3Q9H4D5 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.28■■□□□ 1
NXF3Q9H4D5 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NXF3Q9H4D5 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NXF3Q9H4D5 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.27■■□□□ 1
NXF3Q9H4D5 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
NXF3Q9H4D5 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.27■■□□□ 1
NXF3Q9H4D5 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NXF3Q9H4D5 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.27■■□□□ 1
NXF3Q9H4D5 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.27■■□□□ 1
NXF3Q9H4D5 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.27■■□□□ 1
NXF3Q9H4D5 AC116562.2-201ENST00000507042 360 ntBASIC21.27■■□□□ 1
NXF3Q9H4D5 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.27■■□□□ 1
NXF3Q9H4D5 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NXF3Q9H4D5 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NXF3Q9H4D5 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.27■■□□□ 1
NXF3Q9H4D5 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
NXF3Q9H4D5 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
NXF3Q9H4D5 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
NXF3Q9H4D5 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
NXF3Q9H4D5 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.27■□□□□ 0.99
NXF3Q9H4D5 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 KRT8P9-201ENST00000558927 1449 ntBASIC21.26■□□□□ 0.99
NXF3Q9H4D5 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.26■□□□□ 0.99
NXF3Q9H4D5 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.26■□□□□ 0.99
NXF3Q9H4D5 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 AC099778.1-201ENST00000568593 1911 ntBASIC21.25■□□□□ 0.99
NXF3Q9H4D5 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 MMP23A-201ENST00000234610 1017 ntBASIC21.25■□□□□ 0.99
NXF3Q9H4D5 UNC93B2-201ENST00000285383 730 ntBASIC21.25■□□□□ 0.99
NXF3Q9H4D5 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 MESTP1-201ENST00000404287 994 ntBASIC21.25■□□□□ 0.99
NXF3Q9H4D5 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 HLA-A-209ENST00000638375 975 ntBASIC21.25■□□□□ 0.99
NXF3Q9H4D5 AL031985.4-201ENST00000642138 673 ntBASIC21.25■□□□□ 0.99
NXF3Q9H4D5 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NXF3Q9H4D5 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 AL390955.1-201ENST00000428694 934 ntBASIC21.24■□□□□ 0.99
NXF3Q9H4D5 AC004980.1-204ENST00000429707 299 ntBASIC21.24■□□□□ 0.99
NXF3Q9H4D5 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 AC012306.2-201ENST00000609350 630 ntBASIC21.24■□□□□ 0.99
NXF3Q9H4D5 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NXF3Q9H4D5 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms