Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.28■□□□□ 0.36
COL12A1Q99715 AL023973.1-201ENST00000624619 620 ntBASIC17.28■□□□□ 0.36
COL12A1Q99715 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.28■□□□□ 0.36
COL12A1Q99715 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL12A1Q99715 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL12A1Q99715 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL12A1Q99715 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL12A1Q99715 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL12A1Q99715 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.27■□□□□ 0.36
COL12A1Q99715 AC079781.3-201ENST00000449110 356 ntBASIC17.27■□□□□ 0.36
COL12A1Q99715 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.27■□□□□ 0.36
COL12A1Q99715 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.27■□□□□ 0.36
COL12A1Q99715 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
COL12A1Q99715 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL12A1Q99715 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL12A1Q99715 DYM-203ENST00000442713 2147 ntTSL 2 BASIC17.27■□□□□ 0.36
COL12A1Q99715 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL12A1Q99715 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL12A1Q99715 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.27■□□□□ 0.36
COL12A1Q99715 FAM220CP-201ENST00000395253 831 ntBASIC17.27■□□□□ 0.36
COL12A1Q99715 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.27■□□□□ 0.36
COL12A1Q99715 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.27■□□□□ 0.36
COL12A1Q99715 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.27■□□□□ 0.36
COL12A1Q99715 AC079776.4-201ENST00000511039 504 ntBASIC17.27■□□□□ 0.36
COL12A1Q99715 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL12A1Q99715 BX640515.1-201ENST00000617215 977 ntBASIC17.27■□□□□ 0.36
COL12A1Q99715 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL12A1Q99715 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL12A1Q99715 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL12A1Q99715 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.27■□□□□ 0.35
COL12A1Q99715 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL12A1Q99715 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL12A1Q99715 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL12A1Q99715 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.27■□□□□ 0.35
COL12A1Q99715 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.27■□□□□ 0.35
COL12A1Q99715 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL12A1Q99715 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL12A1Q99715 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.26■□□□□ 0.35
COL12A1Q99715 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL12A1Q99715 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL12A1Q99715 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL12A1Q99715 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.26■□□□□ 0.35
COL12A1Q99715 TSPY12P-201ENST00000421279 868 ntBASIC17.26■□□□□ 0.35
COL12A1Q99715 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.26■□□□□ 0.35
COL12A1Q99715 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL12A1Q99715 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
COL12A1Q99715 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL12A1Q99715 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL12A1Q99715 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.26■□□□□ 0.35
COL12A1Q99715 KRT8P36-201ENST00000489121 1440 ntBASIC17.26■□□□□ 0.35
COL12A1Q99715 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL12A1Q99715 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL12A1Q99715 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL12A1Q99715 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.26■□□□□ 0.35
COL12A1Q99715 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.26■□□□□ 0.35
COL12A1Q99715 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL12A1Q99715 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL12A1Q99715 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.26■□□□□ 0.35
COL12A1Q99715 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.25■□□□□ 0.35
COL12A1Q99715 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.25■□□□□ 0.35
COL12A1Q99715 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.25■□□□□ 0.35
COL12A1Q99715 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.25■□□□□ 0.35
COL12A1Q99715 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL12A1Q99715 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.25■□□□□ 0.35
COL12A1Q99715 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC17.25■□□□□ 0.35
COL12A1Q99715 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
COL12A1Q99715 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.25■□□□□ 0.35
COL12A1Q99715 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL12A1Q99715 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
COL12A1Q99715 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL12A1Q99715 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.25■□□□□ 0.35
COL12A1Q99715 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.25■□□□□ 0.35
COL12A1Q99715 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
COL12A1Q99715 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.25■□□□□ 0.35
COL12A1Q99715 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL12A1Q99715 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
COL12A1Q99715 AC004951.3-201ENST00000418645 1148 ntBASIC17.24■□□□□ 0.35
COL12A1Q99715 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL12A1Q99715 LINC01465-201ENST00000408887 1940 ntBASIC17.24■□□□□ 0.35
COL12A1Q99715 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL12A1Q99715 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL12A1Q99715 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COL12A1Q99715 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COL12A1Q99715 GCSHP2-201ENST00000560971 527 ntBASIC17.24■□□□□ 0.35
COL12A1Q99715 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL12A1Q99715 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms