Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.71■□□□□ 0.91
CDX2Q99626 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
CDX2Q99626 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
CDX2Q99626 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.91
CDX2Q99626 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDX2Q99626 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CDX2Q99626 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
CDX2Q99626 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDX2Q99626 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CDX2Q99626 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDX2Q99626 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CDX2Q99626 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.7■□□□□ 0.9
CDX2Q99626 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CDX2Q99626 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
CDX2Q99626 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.7■□□□□ 0.9
CDX2Q99626 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.7■□□□□ 0.9
CDX2Q99626 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.7■□□□□ 0.9
CDX2Q99626 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
CDX2Q99626 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDX2Q99626 HLA-A-201ENST00000376802 1334 ntBASIC20.7■□□□□ 0.9
CDX2Q99626 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDX2Q99626 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDX2Q99626 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDX2Q99626 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDX2Q99626 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.69■□□□□ 0.9
CDX2Q99626 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.69■□□□□ 0.9
CDX2Q99626 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
CDX2Q99626 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.69■□□□□ 0.9
CDX2Q99626 Z85996.1-201ENST00000494644 937 ntBASIC20.69■□□□□ 0.9
CDX2Q99626 AC092865.5-201ENST00000545435 363 ntBASIC20.69■□□□□ 0.9
CDX2Q99626 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.69■□□□□ 0.9
CDX2Q99626 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CDX2Q99626 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.69■□□□□ 0.9
CDX2Q99626 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.69■□□□□ 0.9
CDX2Q99626 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDX2Q99626 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.69■□□□□ 0.9
CDX2Q99626 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.69■□□□□ 0.9
CDX2Q99626 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.69■□□□□ 0.9
CDX2Q99626 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.69■□□□□ 0.9
CDX2Q99626 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CDX2Q99626 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDX2Q99626 AC116351.2-201ENST00000606540 1585 ntBASIC20.68■□□□□ 0.9
CDX2Q99626 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDX2Q99626 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.68■□□□□ 0.9
CDX2Q99626 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.68■□□□□ 0.9
CDX2Q99626 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDX2Q99626 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.68■□□□□ 0.9
CDX2Q99626 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
CDX2Q99626 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.68■□□□□ 0.9
CDX2Q99626 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.68■□□□□ 0.9
CDX2Q99626 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.68■□□□□ 0.9
CDX2Q99626 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.68■□□□□ 0.9
CDX2Q99626 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.68■□□□□ 0.9
CDX2Q99626 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.68■□□□□ 0.9
CDX2Q99626 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDX2Q99626 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.68■□□□□ 0.9
CDX2Q99626 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.68■□□□□ 0.9
CDX2Q99626 KRT8P17-201ENST00000453110 1448 ntBASIC20.68■□□□□ 0.9
CDX2Q99626 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.68■□□□□ 0.9
CDX2Q99626 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDX2Q99626 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDX2Q99626 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDX2Q99626 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDX2Q99626 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CDX2Q99626 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDX2Q99626 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDX2Q99626 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDX2Q99626 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDX2Q99626 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDX2Q99626 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.67■□□□□ 0.9
CDX2Q99626 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.67■□□□□ 0.9
CDX2Q99626 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDX2Q99626 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.67■□□□□ 0.9
CDX2Q99626 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.67■□□□□ 0.9
CDX2Q99626 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.67■□□□□ 0.9
CDX2Q99626 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDX2Q99626 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDX2Q99626 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.67■□□□□ 0.9
CDX2Q99626 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX2Q99626 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
CDX2Q99626 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.66■□□□□ 0.9
CDX2Q99626 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDX2Q99626 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.66■□□□□ 0.9
CDX2Q99626 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.66■□□□□ 0.9
CDX2Q99626 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX2Q99626 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.66■□□□□ 0.9
CDX2Q99626 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX2Q99626 AC022898.2-201ENST00000616822 1312 ntBASIC20.66■□□□□ 0.9
CDX2Q99626 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.66■□□□□ 0.9
CDX2Q99626 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.66■□□□□ 0.9
CDX2Q99626 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX2Q99626 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDX2Q99626 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDX2Q99626 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CDX2Q99626 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDX2Q99626 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX2Q99626 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDX2Q99626 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.65■□□□□ 0.9
CDX2Q99626 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.65■□□□□ 0.9
CDX2Q99626 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms