Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
CPNE4Q96A23 AC004264.1-201ENST00000608354 794 ntBASIC17.66■□□□□ 0.42
CPNE4Q96A23 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.66■□□□□ 0.42
CPNE4Q96A23 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.66■□□□□ 0.42
CPNE4Q96A23 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CPNE4Q96A23 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
CPNE4Q96A23 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
CPNE4Q96A23 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CPNE4Q96A23 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CPNE4Q96A23 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CPNE4Q96A23 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.65■□□□□ 0.42
CPNE4Q96A23 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.65■□□□□ 0.42
CPNE4Q96A23 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CPNE4Q96A23 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
CPNE4Q96A23 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CPNE4Q96A23 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.64■□□□□ 0.42
CPNE4Q96A23 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.64■□□□□ 0.41
CPNE4Q96A23 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CPNE4Q96A23 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 AC009237.14-201ENST00000609975 1594 ntBASIC17.63■□□□□ 0.41
CPNE4Q96A23 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 YBX1P10-201ENST00000444752 975 ntBASIC17.63■□□□□ 0.41
CPNE4Q96A23 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.63■□□□□ 0.41
CPNE4Q96A23 AP006294.2-201ENST00000641667 209 ntBASIC17.63■□□□□ 0.41
CPNE4Q96A23 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CPNE4Q96A23 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms