Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC65Q8IXS2 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 RNA5SP413-201ENST00000516373 109 ntBASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.84■■□□□ 1.09
CCDC65Q8IXS2 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.83■■□□□ 1.09
CCDC65Q8IXS2 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC65Q8IXS2 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC65Q8IXS2 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
CCDC65Q8IXS2 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC65Q8IXS2 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC65Q8IXS2 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
CCDC65Q8IXS2 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
CCDC65Q8IXS2 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.08
CCDC65Q8IXS2 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
CCDC65Q8IXS2 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 KRT18P6-201ENST00000555540 1265 ntBASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.81■■□□□ 1.08
CCDC65Q8IXS2 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 AL121829.2-201ENST00000620908 328 ntBASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC65Q8IXS2 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC65Q8IXS2 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms