Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD3Q3KNS1 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD3Q3KNS1 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 KRT17P3-201ENST00000420566 1262 ntBASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.21■□□□□ 0.67
PTCHD3Q3KNS1 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.2■□□□□ 0.66
PTCHD3Q3KNS1 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 AC018553.1-201ENST00000616682 1458 ntBASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD3Q3KNS1 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTCHD3Q3KNS1 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms