Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDH1Q08174 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
PCDH1Q08174 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
PCDH1Q08174 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.98■□□□□ 0.63
PCDH1Q08174 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.98■□□□□ 0.63
PCDH1Q08174 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDH1Q08174 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.98■□□□□ 0.63
PCDH1Q08174 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.98■□□□□ 0.63
PCDH1Q08174 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.98■□□□□ 0.63
PCDH1Q08174 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.98■□□□□ 0.63
PCDH1Q08174 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDH1Q08174 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
PCDH1Q08174 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDH1Q08174 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
PCDH1Q08174 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.98■□□□□ 0.63
PCDH1Q08174 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
PCDH1Q08174 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.97■□□□□ 0.63
PCDH1Q08174 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PCDH1Q08174 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.97■□□□□ 0.63
PCDH1Q08174 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
PCDH1Q08174 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDH1Q08174 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDH1Q08174 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDH1Q08174 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
PCDH1Q08174 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
PCDH1Q08174 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDH1Q08174 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDH1Q08174 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDH1Q08174 ID1-201ENST00000376105 1233 ntBASIC18.97■□□□□ 0.63
PCDH1Q08174 RPS2P52-201ENST00000469610 820 ntBASIC18.97■□□□□ 0.63
PCDH1Q08174 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.97■□□□□ 0.63
PCDH1Q08174 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.97■□□□□ 0.63
PCDH1Q08174 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.97■□□□□ 0.63
PCDH1Q08174 AC120498.8-201ENST00000614275 531 ntBASIC18.97■□□□□ 0.63
PCDH1Q08174 AC006557.6-201ENST00000623071 864 ntBASIC18.97■□□□□ 0.63
PCDH1Q08174 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.97■□□□□ 0.63
PCDH1Q08174 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDH1Q08174 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDH1Q08174 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
PCDH1Q08174 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.97■□□□□ 0.63
PCDH1Q08174 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PCDH1Q08174 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDH1Q08174 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.97■□□□□ 0.63
PCDH1Q08174 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.97■□□□□ 0.63
PCDH1Q08174 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PCDH1Q08174 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.96■□□□□ 0.63
PCDH1Q08174 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDH1Q08174 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PCDH1Q08174 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PCDH1Q08174 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.96■□□□□ 0.63
PCDH1Q08174 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
PCDH1Q08174 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDH1Q08174 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.96■□□□□ 0.63
PCDH1Q08174 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDH1Q08174 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDH1Q08174 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDH1Q08174 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PCDH1Q08174 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.96■□□□□ 0.63
PCDH1Q08174 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.96■□□□□ 0.63
PCDH1Q08174 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.96■□□□□ 0.63
PCDH1Q08174 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PCDH1Q08174 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDH1Q08174 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.96■□□□□ 0.63
PCDH1Q08174 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDH1Q08174 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PCDH1Q08174 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.95■□□□□ 0.62
PCDH1Q08174 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDH1Q08174 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
PCDH1Q08174 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PCDH1Q08174 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
PCDH1Q08174 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PCDH1Q08174 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.95■□□□□ 0.62
PCDH1Q08174 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PCDH1Q08174 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PCDH1Q08174 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.95■□□□□ 0.62
PCDH1Q08174 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
PCDH1Q08174 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.95■□□□□ 0.62
PCDH1Q08174 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.95■□□□□ 0.62
PCDH1Q08174 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.95■□□□□ 0.62
PCDH1Q08174 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.95■□□□□ 0.62
PCDH1Q08174 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.95■□□□□ 0.62
PCDH1Q08174 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.95■□□□□ 0.62
PCDH1Q08174 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.95■□□□□ 0.62
PCDH1Q08174 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDH1Q08174 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PCDH1Q08174 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms