Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VSX2P58304 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VSX2P58304 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VSX2P58304 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VSX2P58304 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.83■□□□□ 0.61
VSX2P58304 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.83■□□□□ 0.61
VSX2P58304 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
VSX2P58304 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VSX2P58304 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VSX2P58304 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.83■□□□□ 0.61
VSX2P58304 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VSX2P58304 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VSX2P58304 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.83■□□□□ 0.6
VSX2P58304 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.83■□□□□ 0.6
VSX2P58304 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.83■□□□□ 0.6
VSX2P58304 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VSX2P58304 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.83■□□□□ 0.6
VSX2P58304 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.83■□□□□ 0.6
VSX2P58304 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.83■□□□□ 0.6
VSX2P58304 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
VSX2P58304 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
VSX2P58304 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VSX2P58304 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VSX2P58304 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VSX2P58304 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VSX2P58304 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
VSX2P58304 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.82■□□□□ 0.6
VSX2P58304 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VSX2P58304 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VSX2P58304 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.82■□□□□ 0.6
VSX2P58304 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VSX2P58304 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VSX2P58304 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VSX2P58304 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
VSX2P58304 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.82■□□□□ 0.6
VSX2P58304 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VSX2P58304 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
VSX2P58304 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VSX2P58304 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.82■□□□□ 0.6
VSX2P58304 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VSX2P58304 AC008550.1-201ENST00000511500 884 ntBASIC18.82■□□□□ 0.6
VSX2P58304 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.82■□□□□ 0.6
VSX2P58304 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.82■□□□□ 0.6
VSX2P58304 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VSX2P58304 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
VSX2P58304 AC112907.3-201ENST00000577781 2400 ntBASIC18.82■□□□□ 0.6
VSX2P58304 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.82■□□□□ 0.6
VSX2P58304 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.82■□□□□ 0.6
VSX2P58304 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.82■□□□□ 0.6
VSX2P58304 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.82■□□□□ 0.6
VSX2P58304 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.82■□□□□ 0.6
VSX2P58304 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.81■□□□□ 0.6
VSX2P58304 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
VSX2P58304 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.81■□□□□ 0.6
VSX2P58304 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
VSX2P58304 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VSX2P58304 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VSX2P58304 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.81■□□□□ 0.6
VSX2P58304 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.81■□□□□ 0.6
VSX2P58304 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
VSX2P58304 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.81■□□□□ 0.6
VSX2P58304 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.81■□□□□ 0.6
VSX2P58304 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.81■□□□□ 0.6
VSX2P58304 AC004264.1-201ENST00000608354 794 ntBASIC18.81■□□□□ 0.6
VSX2P58304 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VSX2P58304 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.81■□□□□ 0.6
VSX2P58304 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.81■□□□□ 0.6
VSX2P58304 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VSX2P58304 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.81■□□□□ 0.6
VSX2P58304 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX2P58304 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VSX2P58304 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.8■□□□□ 0.6
VSX2P58304 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.8■□□□□ 0.6
VSX2P58304 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX2P58304 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.8■□□□□ 0.6
VSX2P58304 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VSX2P58304 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX2P58304 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.8■□□□□ 0.6
VSX2P58304 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VSX2P58304 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VSX2P58304 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.8■□□□□ 0.6
VSX2P58304 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX2P58304 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX2P58304 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX2P58304 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX2P58304 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.8■□□□□ 0.6
VSX2P58304 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX2P58304 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms