Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HNF4AP41235 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.06■□□□□ 0.64
HNF4AP41235 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.06■□□□□ 0.64
HNF4AP41235 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.05■□□□□ 0.64
HNF4AP41235 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.05■□□□□ 0.64
HNF4AP41235 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.05■□□□□ 0.64
HNF4AP41235 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
HNF4AP41235 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.05■□□□□ 0.64
HNF4AP41235 PNMA6B-201ENST00000538162 1200 ntBASIC19.05■□□□□ 0.64
HNF4AP41235 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.05■□□□□ 0.64
HNF4AP41235 AC060766.5-201ENST00000590539 871 ntBASIC19.05■□□□□ 0.64
HNF4AP41235 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.05■□□□□ 0.64
HNF4AP41235 TREX1-205ENST00000625293 1783 ntBASIC19.05■□□□□ 0.64
HNF4AP41235 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
HNF4AP41235 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.05■□□□□ 0.64
HNF4AP41235 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HNF4AP41235 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.05■□□□□ 0.64
HNF4AP41235 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.05■□□□□ 0.64
HNF4AP41235 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.05■□□□□ 0.64
HNF4AP41235 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HNF4AP41235 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.04■□□□□ 0.64
HNF4AP41235 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
HNF4AP41235 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.04■□□□□ 0.64
HNF4AP41235 AL158211.5-201ENST00000623583 2518 ntBASIC19.04■□□□□ 0.64
HNF4AP41235 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HNF4AP41235 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HNF4AP41235 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HNF4AP41235 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HNF4AP41235 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HNF4AP41235 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HNF4AP41235 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.04■□□□□ 0.64
HNF4AP41235 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.04■□□□□ 0.64
HNF4AP41235 KRT18P6-201ENST00000555540 1265 ntBASIC19.04■□□□□ 0.64
HNF4AP41235 AC116351.2-201ENST00000606540 1585 ntBASIC19.04■□□□□ 0.64
HNF4AP41235 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.04■□□□□ 0.64
HNF4AP41235 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HNF4AP41235 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HNF4AP41235 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.04■□□□□ 0.64
HNF4AP41235 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.04■□□□□ 0.64
HNF4AP41235 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
HNF4AP41235 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
HNF4AP41235 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.03■□□□□ 0.64
HNF4AP41235 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.03■□□□□ 0.64
HNF4AP41235 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.03■□□□□ 0.64
HNF4AP41235 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.03■□□□□ 0.64
HNF4AP41235 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.03■□□□□ 0.64
HNF4AP41235 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.03■□□□□ 0.64
HNF4AP41235 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.03■□□□□ 0.64
HNF4AP41235 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.03■□□□□ 0.64
HNF4AP41235 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.03■□□□□ 0.64
HNF4AP41235 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.03■□□□□ 0.64
HNF4AP41235 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HNF4AP41235 AC018553.1-201ENST00000616682 1458 ntBASIC19.03■□□□□ 0.64
HNF4AP41235 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.03■□□□□ 0.64
HNF4AP41235 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.03■□□□□ 0.64
HNF4AP41235 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.02■□□□□ 0.64
HNF4AP41235 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.02■□□□□ 0.64
HNF4AP41235 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HNF4AP41235 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms