Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC16.67■□□□□ 0.26
USF1P22415 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC16.67■□□□□ 0.26
USF1P22415 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USF1P22415 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC16.66■□□□□ 0.26
USF1P22415 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC16.66■□□□□ 0.26
USF1P22415 AP002982.1-201ENST00000492365 877 ntBASIC16.66■□□□□ 0.26
USF1P22415 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.66■□□□□ 0.26
USF1P22415 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.66■□□□□ 0.26
USF1P22415 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
USF1P22415 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC16.66■□□□□ 0.26
USF1P22415 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC16.66■□□□□ 0.26
USF1P22415 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.66■□□□□ 0.26
USF1P22415 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
USF1P22415 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USF1P22415 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
USF1P22415 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC16.65■□□□□ 0.26
USF1P22415 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
USF1P22415 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
USF1P22415 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
USF1P22415 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
USF1P22415 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.65■□□□□ 0.26
USF1P22415 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
USF1P22415 AL353708.3-201ENST00000610272 989 ntBASIC16.65■□□□□ 0.26
USF1P22415 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
USF1P22415 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.65■□□□□ 0.26
USF1P22415 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.65■□□□□ 0.26
USF1P22415 RNF165-205ENST00000588679 2904 ntBASIC16.65■□□□□ 0.26
USF1P22415 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC16.65■□□□□ 0.26
USF1P22415 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC16.65■□□□□ 0.26
USF1P22415 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USF1P22415 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
USF1P22415 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 FEM1AP1-201ENST00000431297 1995 ntBASIC16.64■□□□□ 0.25
USF1P22415 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC16.64■□□□□ 0.25
USF1P22415 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
USF1P22415 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
USF1P22415 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
USF1P22415 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
USF1P22415 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.64■□□□□ 0.25
USF1P22415 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.64■□□□□ 0.25
USF1P22415 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
USF1P22415 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.64■□□□□ 0.25
USF1P22415 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USF1P22415 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 AL157384.1-201ENST00000445995 2473 ntBASIC16.63■□□□□ 0.25
USF1P22415 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms