Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.14■□□□□ 0.65
HDAC3O15379 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.14■□□□□ 0.65
HDAC3O15379 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.14■□□□□ 0.65
HDAC3O15379 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC3O15379 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
HDAC3O15379 AC013268.1-206ENST00000638368 961 ntBASIC19.14■□□□□ 0.65
HDAC3O15379 AC112229.1-201ENST00000639295 961 ntBASIC19.14■□□□□ 0.65
HDAC3O15379 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC3O15379 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.14■□□□□ 0.65
HDAC3O15379 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC3O15379 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC3O15379 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC3O15379 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC3O15379 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDAC3O15379 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
HDAC3O15379 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC3O15379 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
HDAC3O15379 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC3O15379 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC3O15379 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
HDAC3O15379 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.13■□□□□ 0.65
HDAC3O15379 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC3O15379 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC3O15379 MFSD11-216ENST00000590393 1141 ntBASIC19.13■□□□□ 0.65
HDAC3O15379 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.13■□□□□ 0.65
HDAC3O15379 AC105020.6-201ENST00000621523 1217 ntBASIC19.13■□□□□ 0.65
HDAC3O15379 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC3O15379 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC3O15379 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HDAC3O15379 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC3O15379 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC3O15379 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.13■□□□□ 0.65
HDAC3O15379 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC3O15379 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDAC3O15379 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.12■□□□□ 0.65
HDAC3O15379 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HDAC3O15379 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HDAC3O15379 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDAC3O15379 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
HDAC3O15379 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC3O15379 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
HDAC3O15379 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
HDAC3O15379 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC3O15379 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC3O15379 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.11■□□□□ 0.65
HDAC3O15379 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.11■□□□□ 0.65
HDAC3O15379 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC3O15379 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
HDAC3O15379 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC3O15379 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC3O15379 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC3O15379 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC3O15379 RARRES2P4-201ENST00000514074 484 ntBASIC19.11■□□□□ 0.65
HDAC3O15379 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.11■□□□□ 0.65
HDAC3O15379 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.11■□□□□ 0.65
HDAC3O15379 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.11■□□□□ 0.65
HDAC3O15379 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
HDAC3O15379 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDAC3O15379 CROCCP3-202ENST00000420820 1947 ntBASIC19.11■□□□□ 0.65
HDAC3O15379 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
HDAC3O15379 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
HDAC3O15379 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
HDAC3O15379 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.1■□□□□ 0.65
HDAC3O15379 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
HDAC3O15379 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDAC3O15379 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
HDAC3O15379 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HDAC3O15379 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDAC3O15379 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDAC3O15379 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.1■□□□□ 0.65
HDAC3O15379 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.1■□□□□ 0.65
HDAC3O15379 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HDAC3O15379 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
HDAC3O15379 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDAC3O15379 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HDAC3O15379 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
HDAC3O15379 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
HDAC3O15379 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HDAC3O15379 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDAC3O15379 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDAC3O15379 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HDAC3O15379 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDAC3O15379 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.09■□□□□ 0.65
HDAC3O15379 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.09■□□□□ 0.65
HDAC3O15379 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.09■□□□□ 0.65
HDAC3O15379 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
HDAC3O15379 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
HDAC3O15379 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms