Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.13■□□□□ 0.81
CBX4O00257 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CBX4O00257 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CBX4O00257 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CBX4O00257 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CBX4O00257 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.13■□□□□ 0.81
CBX4O00257 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CBX4O00257 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CBX4O00257 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.13■□□□□ 0.81
CBX4O00257 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CBX4O00257 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CBX4O00257 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.12■□□□□ 0.81
CBX4O00257 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CBX4O00257 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.12■□□□□ 0.81
CBX4O00257 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CBX4O00257 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CBX4O00257 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CBX4O00257 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CBX4O00257 AC004264.1-201ENST00000608354 794 ntBASIC20.12■□□□□ 0.81
CBX4O00257 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CBX4O00257 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.12■□□□□ 0.81
CBX4O00257 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CBX4O00257 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CBX4O00257 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CBX4O00257 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.12■□□□□ 0.81
CBX4O00257 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.12■□□□□ 0.81
CBX4O00257 AP001271.2-201ENST00000624018 1556 ntBASIC20.12■□□□□ 0.81
CBX4O00257 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CBX4O00257 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CBX4O00257 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.12■□□□□ 0.81
CBX4O00257 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CBX4O00257 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.11■□□□□ 0.81
CBX4O00257 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.11■□□□□ 0.81
CBX4O00257 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CBX4O00257 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.11■□□□□ 0.81
CBX4O00257 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CBX4O00257 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CBX4O00257 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.11■□□□□ 0.81
CBX4O00257 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.11■□□□□ 0.81
CBX4O00257 ECEL1P3-201ENST00000427961 737 ntBASIC20.11■□□□□ 0.81
CBX4O00257 SNORA78-201ENST00000459373 127 ntBASIC20.11■□□□□ 0.81
CBX4O00257 MIR4497-201ENST00000583208 89 ntBASIC20.11■□□□□ 0.81
CBX4O00257 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.11■□□□□ 0.81
CBX4O00257 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.11■□□□□ 0.81
CBX4O00257 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.11■□□□□ 0.81
CBX4O00257 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
CBX4O00257 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CBX4O00257 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CBX4O00257 TCF3P1-201ENST00000423021 1937 ntBASIC20.11■□□□□ 0.81
CBX4O00257 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CBX4O00257 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CBX4O00257 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CBX4O00257 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CBX4O00257 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CBX4O00257 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.11■□□□□ 0.81
CBX4O00257 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CBX4O00257 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CBX4O00257 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CBX4O00257 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.1■□□□□ 0.81
CBX4O00257 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.1■□□□□ 0.81
CBX4O00257 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.1■□□□□ 0.81
CBX4O00257 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
CBX4O00257 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CBX4O00257 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CBX4O00257 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CBX4O00257 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CBX4O00257 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.1■□□□□ 0.81
CBX4O00257 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CBX4O00257 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CBX4O00257 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.1■□□□□ 0.81
CBX4O00257 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.1■□□□□ 0.81
CBX4O00257 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CBX4O00257 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CBX4O00257 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.1■□□□□ 0.81
CBX4O00257 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.1■□□□□ 0.81
CBX4O00257 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CBX4O00257 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.1■□□□□ 0.81
CBX4O00257 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CBX4O00257 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.1■□□□□ 0.81
CBX4O00257 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CBX4O00257 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CBX4O00257 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CBX4O00257 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.09■□□□□ 0.81
CBX4O00257 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CBX4O00257 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
CBX4O00257 MIR718-201ENST00000390190 70 ntBASIC20.09■□□□□ 0.81
CBX4O00257 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CBX4O00257 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CBX4O00257 KRT16P5-201ENST00000455284 522 ntBASIC20.09■□□□□ 0.81
CBX4O00257 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CBX4O00257 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.09■□□□□ 0.81
CBX4O00257 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CBX4O00257 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.09■□□□□ 0.81
CBX4O00257 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CBX4O00257 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CBX4O00257 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CBX4O00257 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CBX4O00257 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CBX4O00257 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
CBX4O00257 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms