Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RPEP3-201ENST00000425462 676 ntBASIC5.59□□□□□ -1.51
COL6A3P12111 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.59□□□□□ -1.51
COL6A3P12111 RPL23AP40-201ENST00000487630 390 ntBASIC5.59□□□□□ -1.51
COL6A3P12111 GTF2F2P1-201ENST00000511083 675 ntBASIC5.59□□□□□ -1.51
COL6A3P12111 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.59□□□□□ -1.51
COL6A3P12111 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A3P12111 FRAS1-201ENST00000325942 7142 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A3P12111 SPTAN1-203ENST00000372739 7868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A3P12111 SCD-201ENST00000370355 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A3P12111 AP3B1-201ENST00000255194 5838 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A3P12111 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A3P12111 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL6A3P12111 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL6A3P12111 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL6A3P12111 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.59□□□□□ -1.52
COL6A3P12111 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.59□□□□□ -1.52
COL6A3P12111 OR4C10P-201ENST00000434991 931 ntBASIC5.59□□□□□ -1.52
COL6A3P12111 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC5.59□□□□□ -1.52
COL6A3P12111 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.59□□□□□ -1.52
COL6A3P12111 AC092130.1-201ENST00000565531 531 ntTSL 4 BASIC5.59□□□□□ -1.52
COL6A3P12111 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.59□□□□□ -1.52
COL6A3P12111 MEMO1P5-201ENST00000604810 406 ntBASIC5.59□□□□□ -1.52
COL6A3P12111 AC015722.2-201ENST00000622210 551 ntBASIC5.59□□□□□ -1.52
COL6A3P12111 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL6A3P12111 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.59□□□□□ -1.52
COL6A3P12111 POGZ-201ENST00000271715 6626 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL6A3P12111 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL6A3P12111 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC5.58□□□□□ -1.52
COL6A3P12111 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 AC144833.1-201ENST00000567953 4089 ntBASIC5.58□□□□□ -1.52
COL6A3P12111 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.58□□□□□ -1.52
COL6A3P12111 FAT3-206ENST00000533797 7894 ntTSL 2 BASIC5.58□□□□□ -1.52
COL6A3P12111 NRAP-201ENST00000359988 5580 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC5.58□□□□□ -1.52
COL6A3P12111 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 AC007161.1-204ENST00000423039 460 ntBASIC5.58□□□□□ -1.52
COL6A3P12111 AC093414.1-201ENST00000434712 514 ntBASIC5.58□□□□□ -1.52
COL6A3P12111 AC006978.2-201ENST00000442800 666 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
COL6A3P12111 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A3P12111 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A3P12111 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A3P12111 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A3P12111 SYK-202ENST00000375747 4908 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 MAK-202ENST00000354489 3941 ntTSL 5 BASIC5.58□□□□□ -1.52
COL6A3P12111 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 CREB3L2-201ENST00000330387 7412 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 SNORA73.1-201ENST00000363107 205 ntBASIC5.58□□□□□ -1.52
COL6A3P12111 AL672167.2-201ENST00000377164 879 ntBASIC5.58□□□□□ -1.52
COL6A3P12111 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A3P12111 AC006967.1-201ENST00000467608 589 ntBASIC5.58□□□□□ -1.52
COL6A3P12111 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.58□□□□□ -1.52
COL6A3P12111 AOX3P-204ENST00000491025 2107 ntBASIC5.58□□□□□ -1.52
COL6A3P12111 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A3P12111 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC5.58□□□□□ -1.52
COL6A3P12111 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 AC104066.2-201ENST00000564513 1741 ntTSL 3 BASIC5.58□□□□□ -1.52
COL6A3P12111 GREB1L-201ENST00000269218 5600 ntTSL 5 BASIC5.58□□□□□ -1.52
COL6A3P12111 PIK3C2B-204ENST00000424712 7522 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 ZNF37A-201ENST00000351773 7027 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 GPR161-208ENST00000537209 8256 ntTSL 2 BASIC5.58□□□□□ -1.52
COL6A3P12111 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
COL6A3P12111 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL6A3P12111 AC013488.1-201ENST00000526618 1838 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.57□□□□□ -1.52
COL6A3P12111 MYO9A-201ENST00000356056 12411 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 MYH1-201ENST00000226207 6024 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
COL6A3P12111 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
COL6A3P12111 AL732292.1-201ENST00000426692 226 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
COL6A3P12111 PHBP16-201ENST00000446318 950 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 REG1CP-206ENST00000447469 496 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 AC012560.1-203ENST00000510550 595 ntTSL 4 BASIC5.57□□□□□ -1.52
COL6A3P12111 AC011471.1-201ENST00000585766 187 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.57□□□□□ -1.52
COL6A3P12111 KC877982.1-201ENST00000602313 470 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
COL6A3P12111 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.57□□□□□ -1.52
COL6A3P12111 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.57□□□□□ -1.52
COL6A3P12111 AL078621.3-201ENST00000623707 2042 ntBASIC5.57□□□□□ -1.52
COL6A3P12111 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 UHRF1BP1-201ENST00000192788 9570 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 OPCML-201ENST00000331898 6833 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL6A3P12111 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms