Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 XIST-201ENST00000416330 750 ntTSL 2 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AL389925.1-201ENST00000432257 728 ntBASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AC093166.4-201ENST00000457867 318 ntBASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AC099521.1-201ENST00000482557 334 ntBASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 RPL38P3-201ENST00000484463 213 ntBASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 SNORD46.2-201ENST00000516021 102 ntBASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 RPL12P48-201ENST00000605620 304 ntBASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AC100814.1-201ENST00000606963 623 ntBASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AL162377.2-201ENST00000624532 337 ntBASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AC130304.1-201ENST00000622942 2385 ntBASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 CDY11P-201ENST00000447168 1651 ntBASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
SNX9Q9Y5X1 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 RNA5-8SP5-201ENST00000365304 152 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 NPM1P10-201ENST00000398310 865 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 NPM1P37-201ENST00000403105 874 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 RN7SKP29-201ENST00000410957 272 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 MRPL53P1-201ENST00000414323 319 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 TET1P1-201ENST00000426627 2301 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 NFYAP1-201ENST00000431953 972 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 AC023141.8-201ENST00000442554 208 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 AL358876.1-201ENST00000453364 1075 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 UBFD1P1-201ENST00000473259 814 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 PSMA2P2-201ENST00000504319 686 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 UGT2A3P7-201ENST00000510485 734 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 MIR2117-201ENST00000516780 80 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 AC022826.1-201ENST00000519383 805 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 IGLV3-30-201ENST00000524362 298 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 AC244502.2-201ENST00000543361 851 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 AL049779.3-201ENST00000557141 606 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 AC091078.2-201ENST00000557145 559 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 AC008521.2-201ENST00000591021 259 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 AP005431.1-201ENST00000618479 319 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 AF117829.2-201ENST00000619538 361 ntBASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 NLN-202ENST00000502464 8354 ntTSL 5 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.29□□□□□ -1.4
SNX9Q9Y5X1 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 RNU11-201ENST00000387069 134 ntBASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 AC021876.1-201ENST00000425959 359 ntBASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 DEFA9P-201ENST00000433042 285 ntBASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.28□□□□□ -1.4
SNX9Q9Y5X1 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms