Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MTND4LP14-201ENST00000429447 288 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 MTCO3P5-201ENST00000433620 714 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 PNKDP1-201ENST00000435914 430 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.53□□□□□ -1.36
USP39Q53GS9 MUPP-201ENST00000438111 566 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 THAP5P1-201ENST00000439089 262 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC6.53□□□□□ -1.36
USP39Q53GS9 CXCR2P1-202ENST00000443392 1074 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC6.53□□□□□ -1.36
USP39Q53GS9 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.53□□□□□ -1.36
USP39Q53GS9 AC084754.1-201ENST00000463466 464 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 RPL12P30-201ENST00000488389 499 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 LSM3P4-201ENST00000502948 309 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 SNX18P24-201ENST00000505249 671 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
USP39Q53GS9 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 Y_RNA.655-201ENST00000515919 96 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 SNORA81.2-201ENST00000516868 170 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 VTA1P2-201ENST00000520205 911 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 IGKV1OR22-1-201ENST00000521497 360 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC6.53□□□□□ -1.36
USP39Q53GS9 AC007834.2-201ENST00000536310 343 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
USP39Q53GS9 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 AC106785.4-201ENST00000569492 412 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 PIGPP4-201ENST00000584447 307 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.53□□□□□ -1.36
USP39Q53GS9 AP000864.1-201ENST00000609424 650 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 AC005332.10-201ENST00000612725 619 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
USP39Q53GS9 AL354718.1-201ENST00000619764 589 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 SNX18P12-201ENST00000624821 759 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC6.53□□□□□ -1.36
USP39Q53GS9 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
USP39Q53GS9 AC009120.2-204ENST00000621548 2032 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
USP39Q53GS9 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
USP39Q53GS9 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
USP39Q53GS9 MTCO1P22-201ENST00000604619 1360 ntBASIC6.53□□□□□ -1.36
USP39Q53GS9 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
USP39Q53GS9 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
USP39Q53GS9 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
USP39Q53GS9 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC6.53□□□□□ -1.36
USP39Q53GS9 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.53□□□□□ -1.36
USP39Q53GS9 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.53□□□□□ -1.36
USP39Q53GS9 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
USP39Q53GS9 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
USP39Q53GS9 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.36
USP39Q53GS9 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
USP39Q53GS9 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 MR1-209ENST00000617803 7584 ntTSL 5 BASIC6.52□□□□□ -1.37
USP39Q53GS9 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC023245.2-201ENST00000530760 2978 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.52□□□□□ -1.37
USP39Q53GS9 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.52□□□□□ -1.37
USP39Q53GS9 CASC19-243ENST00000641588 1546 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC022905.1-201ENST00000503430 3048 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
USP39Q53GS9 GLYATL1P1-201ENST00000528297 1607 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC6.52□□□□□ -1.37
USP39Q53GS9 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 OR2M1P-201ENST00000318104 951 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
USP39Q53GS9 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
USP39Q53GS9 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
USP39Q53GS9 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AL592310.1-201ENST00000414330 671 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC6.52□□□□□ -1.37
USP39Q53GS9 RPL36P18-201ENST00000419316 318 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AL512637.2-201ENST00000431287 1256 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 NDUFA5P10-201ENST00000432147 357 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC245452.2-201ENST00000435222 392 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC6.52□□□□□ -1.37
USP39Q53GS9 OR6K5P-201ENST00000447050 945 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC112492.1-201ENST00000449607 712 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 SNORD11.1-201ENST00000459482 85 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
USP39Q53GS9 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.52□□□□□ -1.37
USP39Q53GS9 RN7SL214P-201ENST00000487317 265 ntBASIC6.52□□□□□ -1.37
USP39Q53GS9 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC6.52□□□□□ -1.37
USP39Q53GS9 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms