Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC3.9□□□□□ -1.78
PRKDCP78527 ELP2-203ENST00000358232 8459 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
PRKDCP78527 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
PRKDCP78527 ICA1L-222ENST00000617388 8151 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.78
PRKDCP78527 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC3.9□□□□□ -1.78
PRKDCP78527 TXNL1-201ENST00000217515 6894 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
PRKDCP78527 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
PRKDCP78527 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC3.9□□□□□ -1.78
PRKDCP78527 AC022893.2-201ENST00000564832 3296 ntBASIC3.9□□□□□ -1.78
PRKDCP78527 AC022819.1-201ENST00000563495 3910 ntBASIC3.9□□□□□ -1.78
PRKDCP78527 AL049697.2-201ENST00000403708 294 ntBASIC3.9□□□□□ -1.78
PRKDCP78527 AC004074.1-201ENST00000421810 1063 ntBASIC3.9□□□□□ -1.78
PRKDCP78527 AC140172.1-201ENST00000502928 141 ntBASIC3.9□□□□□ -1.78
PRKDCP78527 MORF4L1P3-201ENST00000525966 950 ntBASIC3.9□□□□□ -1.78
PRKDCP78527 MEMO1P5-201ENST00000604810 406 ntBASIC3.9□□□□□ -1.78
PRKDCP78527 AL356218.2-201ENST00000605264 187 ntBASIC3.9□□□□□ -1.78
PRKDCP78527 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC3.9□□□□□ -1.78
PRKDCP78527 TNC-203ENST00000423613 6281 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
PRKDCP78527 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 OPHN1-201ENST00000355520 7879 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 TRAK2-201ENST00000332624 6510 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
PRKDCP78527 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
PRKDCP78527 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC3.9□□□□□ -1.79
PRKDCP78527 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC3.9□□□□□ -1.79
PRKDCP78527 ZSCAN29-202ENST00000396976 5595 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC3.9□□□□□ -1.79
PRKDCP78527 PKD1L2-203ENST00000525539 7379 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 OR9G4-201ENST00000302957 984 ntBASIC3.9□□□□□ -1.79
PRKDCP78527 RPEP3-201ENST00000425462 676 ntBASIC3.9□□□□□ -1.79
PRKDCP78527 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.9□□□□□ -1.79
PRKDCP78527 AL365220.1-201ENST00000432923 399 ntBASIC3.9□□□□□ -1.79
PRKDCP78527 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.9□□□□□ -1.79
PRKDCP78527 MED28P5-201ENST00000528254 438 ntBASIC3.9□□□□□ -1.79
PRKDCP78527 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC3.9□□□□□ -1.79
PRKDCP78527 MIR3667-201ENST00000581025 74 ntBASIC3.9□□□□□ -1.79
PRKDCP78527 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC3.9□□□□□ -1.79
PRKDCP78527 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
PRKDCP78527 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
PRKDCP78527 TRERF1-205ENST00000541110 7646 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 AC008938.1-201ENST00000566929 6510 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC3.9□□□□□ -1.79
PRKDCP78527 TMEM178B-202ENST00000565468 10558 ntAPPRIS P2 TSL 5 BASIC3.9□□□□□ -1.79
PRKDCP78527 TMEM178B-203ENST00000610315 10552 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
PRKDCP78527 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC3.9□□□□□ -1.79
PRKDCP78527 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
PRKDCP78527 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 ZAN-205ENST00000613979 8669 ntAPPRIS P4 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 ERN1-201ENST00000433197 7876 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 COL11A1-202ENST00000358392 7327 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
PRKDCP78527 ZNF8-201ENST00000621650 9128 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 METTL2B-204ENST00000480046 5743 ntTSL 2 BASIC3.9□□□□□ -1.79
PRKDCP78527 LUC7L3-208ENST00000505658 7040 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC3.9□□□□□ -1.79
PRKDCP78527 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PRKDCP78527 AC018765.1-201ENST00000623357 3446 ntBASIC3.89□□□□□ -1.79
PRKDCP78527 BX284613.1-201ENST00000452221 1641 ntBASIC3.89□□□□□ -1.79
PRKDCP78527 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
PRKDCP78527 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PRKDCP78527 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC3.89□□□□□ -1.79
PRKDCP78527 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.89□□□□□ -1.79
PRKDCP78527 NIP7P2-201ENST00000485801 544 ntBASIC3.89□□□□□ -1.79
PRKDCP78527 RPL23AP40-201ENST00000487630 390 ntBASIC3.89□□□□□ -1.79
PRKDCP78527 AC009643.1-201ENST00000532030 391 ntBASIC3.89□□□□□ -1.79
PRKDCP78527 AC139697.1-201ENST00000548429 745 ntBASIC3.89□□□□□ -1.79
PRKDCP78527 AC011487.3-201ENST00000593607 453 ntBASIC3.89□□□□□ -1.79
PRKDCP78527 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC3.89□□□□□ -1.79
PRKDCP78527 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
PRKDCP78527 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC3.89□□□□□ -1.79
PRKDCP78527 CHFR-201ENST00000266880 11133 ntTSL 2 BASIC3.89□□□□□ -1.79
PRKDCP78527 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC3.89□□□□□ -1.79
PRKDCP78527 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
PRKDCP78527 CEP41-201ENST00000223208 6513 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PRKDCP78527 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PRKDCP78527 SERPINA10-201ENST00000261994 4978 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
PRKDCP78527 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC3.89□□□□□ -1.79
PRKDCP78527 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PRKDCP78527 AC007161.1-204ENST00000423039 460 ntBASIC3.89□□□□□ -1.79
PRKDCP78527 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PRKDCP78527 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.89□□□□□ -1.79
PRKDCP78527 RN7SKP99-201ENST00000517028 307 ntBASIC3.89□□□□□ -1.79
PRKDCP78527 AL034374.2-201ENST00000605281 548 ntBASIC3.89□□□□□ -1.79
PRKDCP78527 OFD1P8Y-201ENST00000449148 1433 ntBASIC3.89□□□□□ -1.79
PRKDCP78527 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PRKDCP78527 CLCN4-202ENST00000380833 6750 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PRKDCP78527 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
PRKDCP78527 SCD-201ENST00000370355 5362 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PRKDCP78527 ATMIN-206ENST00000566488 5343 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PRKDCP78527 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms