RNA–Protein interactions for RNA: ENST00000358392.6

COL11A1-202, Transcript of collagen type XI alpha 1 chain, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene COL11A1, Length 7,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1-202ENST00000358392 DCAF8L2P0C7V8 631 aa19.02■□□□□ 0.64
COL11A1-202ENST00000358392 EHMT2Q96KQ7 1210 aa18.17■□□□□ 0.5
COL11A1-202ENST00000358392 PELP1Q8IZL8 1130 aaKnown RBP18.11■□□□□ 0.49
COL11A1-202ENST00000358392 SUPT5HO00267 1087 aaKnown RBP18.09■□□□□ 0.49
COL11A1-202ENST00000358392 ERICH6Q7L0X2 663 aa17.68■□□□□ 0.42
COL11A1-202ENST00000358392 SHROOM4Q9ULL8 1493 aa17.61■□□□□ 0.41
COL11A1-202ENST00000358392 TTBK1Q5TCY1 1321 aaPredicted RBP17.58■□□□□ 0.4
COL11A1-202ENST00000358392 APLP2Q06481 763 aa17.43■□□□□ 0.38
COL11A1-202ENST00000358392 CCER1Q8TC90 406 aaPredicted RBP17.31■□□□□ 0.36
COL11A1-202ENST00000358392 PCGF6Q9BYE7 350 aa17.29■□□□□ 0.36
COL11A1-202ENST00000358392 FAM9AQ8IZU1 332 aaPredicted RBP17.26■□□□□ 0.35
COL11A1-202ENST00000358392 MYT1Q01538 1121 aa17.25■□□□□ 0.35
COL11A1-202ENST00000358392 CENPBP07199 599 aaPredicted RBP17.21■□□□□ 0.35
COL11A1-202ENST00000358392 RANGAP1P46060 587 aaPredicted RBP17.17■□□□□ 0.34
COL11A1-202ENST00000358392 YTHDC1Q96MU7 727 aaKnown RBP17.14■□□□□ 0.33
COL11A1-202ENST00000358392 ATP1B4Q9UN42 357 aaPredicted RBP16.99■□□□□ 0.31
COL11A1-202ENST00000358392 NEFLP07196 543 aa16.97■□□□□ 0.31
COL11A1-202ENST00000358392 ZEB1P37275 1124 aaPredicted RBP16.78■□□□□ 0.28
COL11A1-202ENST00000358392 DAXXQ9UER7 740 aaPredicted RBP16.72■□□□□ 0.27
COL11A1-202ENST00000358392 PPARGC1BQ86YN6 1023 aaKnown RBP16.68■□□□□ 0.26
COL11A1-202ENST00000358392 POLR3GLQ9BT43 218 aa16.59■□□□□ 0.25
COL11A1-202ENST00000358392 CNGB1Q14028 1251 aaPredicted RBP16.58■□□□□ 0.25
COL11A1-202ENST00000358392 UBTFP17480 764 aaKnown RBP16.56■□□□□ 0.24
COL11A1-202ENST00000358392 TRIM41Q8WV44 630 aa16.54■□□□□ 0.24
COL11A1-202ENST00000358392 NISCHQ9Y2I1 1504 aa16.4■□□□□ 0.22
COL11A1-202ENST00000358392 ITGAEP38570 1179 aa16.37■□□□□ 0.21
COL11A1-202ENST00000358392 MYT1LQ9UL68 1186 aa16.35■□□□□ 0.21
COL11A1-202ENST00000358392 ZNF316A6NFI3 1004 aaPredicted RBP16.34■□□□□ 0.21
COL11A1-202ENST00000358392 CHIC1Q5VXU3 224 aa16.33■□□□□ 0.21
COL11A1-202ENST00000358392 RTL5Q5HYW3 569 aaPredicted RBP16.31■□□□□ 0.2
COL11A1-202ENST00000358392 SLC4A1APQ9BWU0 796 aaKnown RBP16.28■□□□□ 0.2
COL11A1-202ENST00000358392 CLSPNQ9HAW4 1339 aa16.26■□□□□ 0.19
COL11A1-202ENST00000358392 HRCP23327 699 aa16.22■□□□□ 0.19
COL11A1-202ENST00000358392 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.16■□□□□ 0.18
COL11A1-202ENST00000358392 HNRNPUL2Q1KMD3 747 aaKnown RBP16.16■□□□□ 0.18
COL11A1-202ENST00000358392 TRIM26Q12899 539 aaPredicted RBP16.15■□□□□ 0.18
COL11A1-202ENST00000358392 BCANQ96GW7 911 aa16.1■□□□□ 0.17
COL11A1-202ENST00000358392 BCL11AQ9H165 835 aa16.04■□□□□ 0.16
COL11A1-202ENST00000358392 DIEXFQ68CQ4 756 aaKnown RBP15.94■□□□□ 0.14
COL11A1-202ENST00000358392 LOC105371045A0A1W2PR82 267 aa15.92■□□□□ 0.14
COL11A1-202ENST00000358392 GTF3C3Q9Y5Q9 886 aa15.84■□□□□ 0.13
COL11A1-202ENST00000358392 SLC24A1O60721 1099 aa15.83■□□□□ 0.13
COL11A1-202ENST00000358392 CDK11AQ9UQ88 783 aaPredicted RBP15.8■□□□□ 0.12
COL11A1-202ENST00000358392 NEUROD1Q13562 356 aa15.79■□□□□ 0.12
COL11A1-202ENST00000358392 EIF5BO60841 1220 aaKnown RBP15.79■□□□□ 0.12
COL11A1-202ENST00000358392 ZBTB47Q9UFB7 747 aaPredicted RBP15.79■□□□□ 0.12
COL11A1-202ENST00000358392 FAM50AQ14320 339 aaKnown RBP15.75■□□□□ 0.11
COL11A1-202ENST00000358392 TRIM52Q96A61 297 aa15.72■□□□□ 0.11
COL11A1-202ENST00000358392 NPM2Q86SE8 214 aaKnown RBP15.72■□□□□ 0.11
COL11A1-202ENST00000358392 ZNF326Q5BKZ1 582 aaKnown RBP15.71■□□□□ 0.11
COL11A1-202ENST00000358392 CANXP27824 592 aaKnown RBP15.7■□□□□ 0.1
COL11A1-202ENST00000358392 ANP32CO43423 234 aa15.62■□□□□ 0.09
COL11A1-202ENST00000358392 ANP32AP39687 249 aaKnown RBP15.58■□□□□ 0.08
COL11A1-202ENST00000358392 ARXQ96QS3 562 aa15.52■□□□□ 0.08
COL11A1-202ENST00000358392 ANP32BQ92688 251 aaKnown RBP15.48■□□□□ 0.07
COL11A1-202ENST00000358392 HSP90AA1P07900 732 aaKnown RBP15.45■□□□□ 0.06
COL11A1-202ENST00000358392 NBR1Q14596 966 aa15.44■□□□□ 0.06
COL11A1-202ENST00000358392 NEFMP07197 916 aa15.4■□□□□ 0.06
COL11A1-202ENST00000358392 GLIPR1L2Q4G1C9 344 aa15.39■□□□□ 0.05
COL11A1-202ENST00000358392 FKBP8Q14318 412 aa15.36■□□□□ 0.05
COL11A1-202ENST00000358392 ACIN1Q9UKV3 1341 aaKnown RBP15.35■□□□□ 0.05
COL11A1-202ENST00000358392 SALL2Q9Y467 1007 aaPredicted RBP15.3■□□□□ 0.04
COL11A1-202ENST00000358392 ARID3CA6NKF2 412 aa15.29■□□□□ 0.04
COL11A1-202ENST00000358392 UPF2Q9HAU5 1272 aaKnown RBP15.24■□□□□ 0.03
COL11A1-202ENST00000358392 PLPPR3Q6T4P5 718 aa15.22■□□□□ 0.03
COL11A1-202ENST00000358392 FBLN2P98095 1184 aa15.21■□□□□ 0.03
COL11A1-202ENST00000358392 FAM9BQ8IZU0 186 aa15.2■□□□□ 0.02
COL11A1-202ENST00000358392 HNRNPUQ00839 825 aaKnown RBP eCLIP15.16■□□□□ 0.02
COL11A1-202ENST00000358392 P3H3Q8IVL6 736 aa15.16■□□□□ 0.02
COL11A1-202ENST00000358392 ZNF777Q9ULD5 760 aaPredicted RBP15.13■□□□□ 0.01
COL11A1-202ENST00000358392 IRX6P78412 446 aaPredicted RBP15.13■□□□□ 0.01
COL11A1-202ENST00000358392 CHGAP10645 457 aaKnown RBP15.09■□□□□ 0.01
COL11A1-202ENST00000358392 CCDC136Q96JN2 1154 aa15.09■□□□□ 0.01
COL11A1-202ENST00000358392 CDK11BP21127 795 aaKnown RBP15.09■□□□□ 0.01
COL11A1-202ENST00000358392 TPRNQ4KMQ1 711 aa15.08■□□□□ 0
COL11A1-202ENST00000358392 DDX10Q13206 875 aaKnown RBP15.05■□□□□ -0
COL11A1-202ENST00000358392 TULP1O00294 542 aaPredicted RBP15.02□□□□□ -0.01
COL11A1-202ENST00000358392 A0A0G2JS52 829 aa15.01□□□□□ -0.01
COL11A1-202ENST00000358392 STAG3Q9UJ98 1225 aa15□□□□□ -0.01
COL11A1-202ENST00000358392 PLEKHG5O94827 1062 aa14.99□□□□□ -0.01
COL11A1-202ENST00000358392 SCAF1Q9H7N4 1312 aaKnown RBP14.99□□□□□ -0.01
COL11A1-202ENST00000358392 TRIM44Q96DX7 344 aaPredicted RBP14.99□□□□□ -0.01
COL11A1-202ENST00000358392 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.98□□□□□ -0.01
COL11A1-202ENST00000358392 RTN4Q9NQC3 1192 aaKnown RBP14.98□□□□□ -0.01
COL11A1-202ENST00000358392 SENP3Q9H4L4 574 aaPredicted RBP14.97□□□□□ -0.01
COL11A1-202ENST00000358392 NCLP19338 710 aaKnown RBP14.96□□□□□ -0.01
COL11A1-202ENST00000358392 TMC1Q8TDI8 760 aa14.95□□□□□ -0.02
COL11A1-202ENST00000358392 AMER1Q5JTC6 1135 aaPredicted RBP14.94□□□□□ -0.02
COL11A1-202ENST00000358392 PABPN1Q86U42 306 aaKnown RBP eCLIP14.94□□□□□ -0.02
COL11A1-202ENST00000358392 SENP3-EIF4A1A0A087X0R7 540 aa14.94□□□□□ -0.02
COL11A1-202ENST00000358392 TONSLQ96HA7 1378 aa14.93□□□□□ -0.02
COL11A1-202ENST00000358392 ESF1Q9H501 851 aaKnown RBP14.93□□□□□ -0.02
COL11A1-202ENST00000358392 WDR43Q15061 677 aaKnown RBP eCLIP14.92□□□□□ -0.02
COL11A1-202ENST00000358392 ZBTB7CA1YPR0 619 aa14.92□□□□□ -0.02
COL11A1-202ENST00000358392 DNTTIP2Q5QJE6 756 aaKnown RBP14.91□□□□□ -0.02
COL11A1-202ENST00000358392 TNNT2P45379 298 aaPredicted RBP14.9□□□□□ -0.02
COL11A1-202ENST00000358392 PTMAP06454 111 aaKnown RBP14.89□□□□□ -0.03
COL11A1-202ENST00000358392 TAOK2Q9UL54 1235 aa14.89□□□□□ -0.03
COL11A1-202ENST00000358392 HIRIP3Q9BW71 556 aaPredicted RBP14.89□□□□□ -0.03
COL11A1-202ENST00000358392 MYH16Q9H6N6 1097 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms