Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AL133445.1-201ENST00000467051 452 ntBASIC6.13□□□□□ -1.43
HOXA9P31269 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXA9P31269 MINCR-206ENST00000524335 499 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXA9P31269 OR4A40P-201ENST00000533878 948 ntBASIC6.13□□□□□ -1.43
HOXA9P31269 GARSP1-201ENST00000570895 719 ntBASIC6.13□□□□□ -1.43
HOXA9P31269 IMMP1LP3-201ENST00000604197 224 ntBASIC6.13□□□□□ -1.43
HOXA9P31269 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXA9P31269 AL035661.1-201ENST00000620459 1144 ntBASIC6.13□□□□□ -1.43
HOXA9P31269 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXA9P31269 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXA9P31269 OR11H2-202ENST00000641517 1085 ntBASIC6.13□□□□□ -1.43
HOXA9P31269 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXA9P31269 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXA9P31269 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXA9P31269 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXA9P31269 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.13□□□□□ -1.43
HOXA9P31269 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXA9P31269 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXA9P31269 LINC01963-201ENST00000562038 3148 ntBASIC6.13□□□□□ -1.43
HOXA9P31269 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXA9P31269 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXA9P31269 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXA9P31269 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXA9P31269 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXA9P31269 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.13□□□□□ -1.43
HOXA9P31269 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
HOXA9P31269 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HOXA9P31269 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXA9P31269 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXA9P31269 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXA9P31269 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXA9P31269 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXA9P31269 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXA9P31269 SNORA70.9-201ENST00000384370 135 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC6.12□□□□□ -1.43
HOXA9P31269 RPL7P58-201ENST00000402913 758 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 HMGA1P8-201ENST00000414130 321 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.12□□□□□ -1.43
HOXA9P31269 AC007562.1-201ENST00000421819 517 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXA9P31269 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
HOXA9P31269 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC6.12□□□□□ -1.43
HOXA9P31269 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.12□□□□□ -1.43
HOXA9P31269 AL663074.2-201ENST00000440621 479 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 AC023274.2-201ENST00000445264 521 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 RN7SL72P-201ENST00000460697 269 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 AL157777.1-201ENST00000468100 304 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 COPS8P2-201ENST00000473228 627 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXA9P31269 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC6.12□□□□□ -1.43
HOXA9P31269 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXA9P31269 SCARNA6.1-201ENST00000516989 238 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXA9P31269 AC008429.4-201ENST00000521201 182 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 MRPS16P1-201ENST00000523462 412 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXA9P31269 LDHC-205ENST00000537486 583 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXA9P31269 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXA9P31269 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC6.12□□□□□ -1.43
HOXA9P31269 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXA9P31269 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.12□□□□□ -1.43
HOXA9P31269 OOSP1P2-201ENST00000579644 351 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXA9P31269 AC027334.1-201ENST00000603257 310 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 uc_338.26-201ENST00000612659 160 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 AC008115.3-201ENST00000614874 549 ntBASIC6.12□□□□□ -1.43
HOXA9P31269 WDR75-207ENST00000631047 270 ntTSL 5 BASIC6.12□□□□□ -1.43
HOXA9P31269 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXA9P31269 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HOXA9P31269 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HOXA9P31269 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXA9P31269 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
HOXA9P31269 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
HOXA9P31269 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXA9P31269 USP9YP3-201ENST00000434481 1766 ntBASIC6.11□□□□□ -1.43
HOXA9P31269 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.11□□□□□ -1.43
HOXA9P31269 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXA9P31269 YES1P1-201ENST00000418510 1628 ntBASIC6.11□□□□□ -1.43
HOXA9P31269 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXA9P31269 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
HOXA9P31269 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HOXA9P31269 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXA9P31269 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXA9P31269 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXA9P31269 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HOXA9P31269 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXA9P31269 OR6E1P-201ENST00000414424 923 ntBASIC6.11□□□□□ -1.43
HOXA9P31269 EEF1A1P29-201ENST00000416082 1096 ntBASIC6.11□□□□□ -1.43
HOXA9P31269 AC019205.1-201ENST00000421830 730 ntBASIC6.11□□□□□ -1.43
HOXA9P31269 RPS12P17-201ENST00000438591 377 ntBASIC6.11□□□□□ -1.43
HOXA9P31269 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC6.11□□□□□ -1.43
HOXA9P31269 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXA9P31269 OARD1-211ENST00000480585 829 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXA9P31269 RN7SL184P-201ENST00000488308 297 ntBASIC6.11□□□□□ -1.43
HOXA9P31269 AC009120.1-201ENST00000493458 473 ntBASIC6.11□□□□□ -1.43
HOXA9P31269 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC6.11□□□□□ -1.43
HOXA9P31269 GTF2IP11-201ENST00000526931 420 ntBASIC6.11□□□□□ -1.43
HOXA9P31269 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC6.11□□□□□ -1.43
HOXA9P31269 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC6.11□□□□□ -1.43
HOXA9P31269 GMFG-212ENST00000602185 423 ntTSL 3 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms