Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSH3P20585 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
MSH3P20585 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.9□□□□□ -1.47
MSH3P20585 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.9□□□□□ -1.47
MSH3P20585 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSH3P20585 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
MSH3P20585 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.9□□□□□ -1.47
MSH3P20585 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.9□□□□□ -1.47
MSH3P20585 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.9□□□□□ -1.47
MSH3P20585 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
MSH3P20585 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
MSH3P20585 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSH3P20585 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
MSH3P20585 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSH3P20585 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSH3P20585 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.89□□□□□ -1.47
MSH3P20585 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSH3P20585 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSH3P20585 RNA5SP211-201ENST00000365516 117 ntBASIC5.89□□□□□ -1.47
MSH3P20585 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.89□□□□□ -1.47
MSH3P20585 RN7SKP240-201ENST00000410583 375 ntBASIC5.89□□□□□ -1.47
MSH3P20585 RPL35AP3-201ENST00000414680 288 ntBASIC5.89□□□□□ -1.47
MSH3P20585 VN1R3-201ENST00000418822 919 ntBASIC5.89□□□□□ -1.47
MSH3P20585 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.89□□□□□ -1.47
MSH3P20585 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH3P20585 GAPDHP75-201ENST00000433910 943 ntBASIC5.89□□□□□ -1.47
MSH3P20585 AL445928.1-201ENST00000435545 222 ntBASIC5.89□□□□□ -1.47
MSH3P20585 AL512637.1-201ENST00000439523 1231 ntBASIC5.89□□□□□ -1.47
MSH3P20585 AC009963.4-201ENST00000448535 339 ntBASIC5.89□□□□□ -1.47
MSH3P20585 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.89□□□□□ -1.47
MSH3P20585 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSH3P20585 AC025458.1-201ENST00000506046 166 ntBASIC5.89□□□□□ -1.47
MSH3P20585 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC5.89□□□□□ -1.47
MSH3P20585 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH3P20585 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.89□□□□□ -1.47
MSH3P20585 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH3P20585 HMGN2P47-201ENST00000559378 272 ntBASIC5.89□□□□□ -1.47
MSH3P20585 NPM1P42-201ENST00000560329 862 ntBASIC5.89□□□□□ -1.47
MSH3P20585 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.89□□□□□ -1.47
MSH3P20585 MIR4776-2-201ENST00000580204 80 ntBASIC5.89□□□□□ -1.47
MSH3P20585 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH3P20585 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.89□□□□□ -1.47
MSH3P20585 AC125494.2-201ENST00000602431 657 ntBASIC5.89□□□□□ -1.47
MSH3P20585 AL138895.2-201ENST00000603019 178 ntBASIC5.89□□□□□ -1.47
MSH3P20585 AL136131.3-201ENST00000607600 188 ntBASIC5.89□□□□□ -1.47
MSH3P20585 AC093388.1-201ENST00000609166 430 ntBASIC5.89□□□□□ -1.47
MSH3P20585 MIR6793-201ENST00000612376 63 ntBASIC5.89□□□□□ -1.47
MSH3P20585 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.89□□□□□ -1.47
MSH3P20585 AC024884.1-201ENST00000620583 399 ntBASIC5.89□□□□□ -1.47
MSH3P20585 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH3P20585 MAPK10-350ENST00000641777 965 ntBASIC5.89□□□□□ -1.47
MSH3P20585 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.89□□□□□ -1.47
MSH3P20585 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.89□□□□□ -1.47
MSH3P20585 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSH3P20585 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.89□□□□□ -1.47
MSH3P20585 AL592429.1-201ENST00000403909 1473 ntBASIC5.89□□□□□ -1.47
MSH3P20585 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
MSH3P20585 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSH3P20585 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSH3P20585 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSH3P20585 AF287957.1-201ENST00000607368 1595 ntBASIC5.89□□□□□ -1.47
MSH3P20585 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSH3P20585 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.88□□□□□ -1.47
MSH3P20585 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSH3P20585 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSH3P20585 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSH3P20585 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSH3P20585 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSH3P20585 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
MSH3P20585 SELENOWP1-201ENST00000322792 252 ntBASIC5.88□□□□□ -1.47
MSH3P20585 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSH3P20585 RN7SKP275-201ENST00000364626 301 ntBASIC5.88□□□□□ -1.47
MSH3P20585 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.88□□□□□ -1.47
MSH3P20585 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
MSH3P20585 RAB5CP1-201ENST00000395972 580 ntBASIC5.88□□□□□ -1.47
MSH3P20585 NPM1P10-201ENST00000398310 865 ntBASIC5.88□□□□□ -1.47
MSH3P20585 AC244453.4-201ENST00000419150 388 ntBASIC5.88□□□□□ -1.47
MSH3P20585 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.88□□□□□ -1.47
MSH3P20585 UBE2V2P1-201ENST00000434717 398 ntBASIC5.88□□□□□ -1.47
MSH3P20585 GEMIN2P1-201ENST00000454246 752 ntBASIC5.88□□□□□ -1.47
MSH3P20585 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.88□□□□□ -1.47
MSH3P20585 ACA64.1-201ENST00000459171 127 ntBASIC5.88□□□□□ -1.47
MSH3P20585 PFN1P6-201ENST00000476786 399 ntBASIC5.88□□□□□ -1.47
MSH3P20585 TRBV5-2-201ENST00000489095 273 ntBASIC5.88□□□□□ -1.47
MSH3P20585 ASB8-203ENST00000535988 679 ntTSL 2 BASIC5.88□□□□□ -1.47
MSH3P20585 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.88□□□□□ -1.47
MSH3P20585 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms