Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS13AQ96RL7 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS13AQ96RL7 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS13AQ96RL7 AC233699.1-201ENST00000569955 1168 ntBASIC5.45□□□□□ -1.54
VPS13AQ96RL7 AC073575.2-201ENST00000614212 627 ntBASIC5.45□□□□□ -1.54
VPS13AQ96RL7 AL355974.3-201ENST00000617383 467 ntBASIC5.45□□□□□ -1.54
VPS13AQ96RL7 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS13AQ96RL7 AC112694.2-201ENST00000623697 768 ntBASIC5.45□□□□□ -1.54
VPS13AQ96RL7 TRPM8-204ENST00000433712 5291 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS13AQ96RL7 HERC2P3-204ENST00000426501 5995 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 INTS6P1-201ENST00000504674 2530 ntBASIC5.44□□□□□ -1.54
VPS13AQ96RL7 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 MIR134-201ENST00000385258 73 ntBASIC5.44□□□□□ -1.54
VPS13AQ96RL7 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.44□□□□□ -1.54
VPS13AQ96RL7 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 MIR92B-201ENST00000607575 96 ntBASIC5.44□□□□□ -1.54
VPS13AQ96RL7 ERCC4-201ENST00000311895 6758 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 AC008124.1-201ENST00000609803 9730 ntBASIC5.44□□□□□ -1.54
VPS13AQ96RL7 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 FLNB-214ENST00000493452 7402 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 MIR133B-201ENST00000362210 119 ntBASIC5.44□□□□□ -1.54
VPS13AQ96RL7 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 RNA5SP373-201ENST00000517271 95 ntBASIC5.44□□□□□ -1.54
VPS13AQ96RL7 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 MIR4675-201ENST00000577898 77 ntBASIC5.44□□□□□ -1.54
VPS13AQ96RL7 AL359757.1-201ENST00000623176 255 ntBASIC5.44□□□□□ -1.54
VPS13AQ96RL7 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 FAM129A-201ENST00000367511 6928 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 ZNF776-201ENST00000317178 5292 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS13AQ96RL7 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 SPATA31D3-201ENST00000445385 4785 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 TVP23CP2-201ENST00000571473 623 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 AC015818.6-201ENST00000584274 634 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 GAS7-204ENST00000437099 8003 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 ZNF733P-202ENST00000444809 1573 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 ATP6V1C1-201ENST00000395862 5612 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 PAPPA2-202ENST00000367662 9691 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 SNORA57.1-201ENST00000391227 145 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 RPL7AP10-201ENST00000481016 791 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 AC109635.6-201ENST00000525487 1113 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 MIR6830-201ENST00000636015 70 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 OR4D9-203ENST00000641962 6123 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 AC139713.2-214ENST00000642059 1811 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 ST8SIA3-201ENST00000324000 11833 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 AC104118.1-201ENST00000607625 1589 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 SPATA31B1P-201ENST00000434692 4016 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 FAM3C2-201ENST00000312214 681 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS13AQ96RL7 AC012254.5-201ENST00000623573 478 ntBASIC5.43□□□□□ -1.54
VPS13AQ96RL7 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS13AQ96RL7 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS13AQ96RL7 NHS-204ENST00000615422 8860 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS13AQ96RL7 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS13AQ96RL7 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS13AQ96RL7 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS13AQ96RL7 KIF13A-213ENST00000636847 5538 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
VPS13AQ96RL7 RPRD2-203ENST00000401000 7605 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS13AQ96RL7 CCDC73-203ENST00000531481 4381 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
VPS13AQ96RL7 AC011379.1-201ENST00000508713 3025 ntBASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms