Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MAPK1-201ENST00000215832 11022 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 RPS4XP9-201ENST00000405151 780 ntBASIC5.49□□□□□ -1.53
VPS13AQ96RL7 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 MIR5095-201ENST00000578844 88 ntBASIC5.49□□□□□ -1.53
VPS13AQ96RL7 ERCC6-201ENST00000355832 8008 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS13AQ96RL7 AC005725.1-201ENST00000577346 2607 ntBASIC5.48□□□□□ -1.53
VPS13AQ96RL7 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 MYOM1-202ENST00000356443 5847 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 C1QTNF7-204ENST00000429690 4464 ntAPPRIS P1 TSL 4 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 RN7SKP100-201ENST00000411258 284 ntBASIC5.48□□□□□ -1.53
VPS13AQ96RL7 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 OR7E158P-201ENST00000524483 910 ntBASIC5.48□□□□□ -1.53
VPS13AQ96RL7 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.48□□□□□ -1.53
VPS13AQ96RL7 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 RNU6-398P-201ENST00000384143 109 ntBASIC5.48□□□□□ -1.53
VPS13AQ96RL7 MIR130A-201ENST00000385274 89 ntBASIC5.48□□□□□ -1.53
VPS13AQ96RL7 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 AL603882.1-201ENST00000463059 681 ntBASIC5.48□□□□□ -1.53
VPS13AQ96RL7 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 AKAP12-203ENST00000359755 6190 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 FRAS1-201ENST00000325942 7142 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
VPS13AQ96RL7 SCAND2P-201ENST00000348993 8975 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AC011369.2-201ENST00000624423 1567 ntBASIC5.47□□□□□ -1.53
VPS13AQ96RL7 PCDH15-229ENST00000616114 5846 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 LINC01881-201ENST00000416103 412 ntBASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AC239367.2-201ENST00000447309 705 ntBASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AC137695.1-201ENST00000604126 489 ntBASIC5.47□□□□□ -1.53
VPS13AQ96RL7 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AC093655.2-201ENST00000425735 631 ntBASIC5.47□□□□□ -1.53
VPS13AQ96RL7 CYCSP42-201ENST00000450823 238 ntBASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 SSX8-201ENST00000506270 579 ntBASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AC106730.2-201ENST00000566641 540 ntBASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AL161616.1-201ENST00000611867 286 ntBASIC5.47□□□□□ -1.53
VPS13AQ96RL7 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 DOCK5-201ENST00000276440 10075 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 THOC5-216ENST00000490103 4753 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 COL4A6-202ENST00000372216 6570 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 RUNX1T1-248ENST00000613302 7687 ntAPPRIS P3 TSL 5 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 LINC01630-201ENST00000435144 5489 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 PTBP3-205ENST00000374257 7240 ntAPPRIS ALT1 TSL 2 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 FAM96AP1-201ENST00000430879 482 ntBASIC5.47□□□□□ -1.53
VPS13AQ96RL7 AC073072.2-201ENST00000447425 348 ntBASIC5.47□□□□□ -1.53
VPS13AQ96RL7 snoU13.20-201ENST00000459180 104 ntBASIC5.47□□□□□ -1.53
VPS13AQ96RL7 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS13AQ96RL7 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
VPS13AQ96RL7 DDI2-202ENST00000480945 10625 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.53
VPS13AQ96RL7 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC5.46□□□□□ -1.53
VPS13AQ96RL7 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
VPS13AQ96RL7 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
VPS13AQ96RL7 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.46□□□□□ -1.53
VPS13AQ96RL7 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS13AQ96RL7 SCN9A-203ENST00000409672 9768 ntAPPRIS P2 TSL 5 BASIC5.46□□□□□ -1.54
VPS13AQ96RL7 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS13AQ96RL7 AC234779.1-201ENST00000425910 285 ntBASIC5.46□□□□□ -1.54
VPS13AQ96RL7 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS13AQ96RL7 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.46□□□□□ -1.54
VPS13AQ96RL7 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS13AQ96RL7 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 125 ms