RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 DCAF8L2P0C7V8 631 aa17.4■□□□□ 0.38
COL4A6-202ENST00000372216 NISCHQ9Y2I1 1504 aa16.65■□□□□ 0.26
COL4A6-202ENST00000372216 SUPT5HO00267 1087 aaKnown RBP16.25■□□□□ 0.19
COL4A6-202ENST00000372216 EHMT2Q96KQ7 1210 aa16.24■□□□□ 0.19
COL4A6-202ENST00000372216 SHROOM4Q9ULL8 1493 aa16.13■□□□□ 0.17
COL4A6-202ENST00000372216 TTBK1Q5TCY1 1321 aaPredicted RBP15.6■□□□□ 0.09
COL4A6-202ENST00000372216 APLP2Q06481 763 aa15.45■□□□□ 0.06
COL4A6-202ENST00000372216 RANGAP1P46060 587 aaPredicted RBP15.44■□□□□ 0.06
COL4A6-202ENST00000372216 FAM9AQ8IZU1 332 aaPredicted RBP15.37■□□□□ 0.05
COL4A6-202ENST00000372216 ATP1B4Q9UN42 357 aaPredicted RBP15.27■□□□□ 0.04
COL4A6-202ENST00000372216 PELP1Q8IZL8 1130 aaKnown RBP15.21■□□□□ 0.03
COL4A6-202ENST00000372216 TRIM41Q8WV44 630 aa15.07■□□□□ 0
COL4A6-202ENST00000372216 ERICH6Q7L0X2 663 aa15.01□□□□□ -0.01
COL4A6-202ENST00000372216 CHIC1Q5VXU3 224 aa14.94□□□□□ -0.02
COL4A6-202ENST00000372216 UBTFP17480 764 aaKnown RBP14.93□□□□□ -0.02
COL4A6-202ENST00000372216 PCGF6Q9BYE7 350 aa14.93□□□□□ -0.02
COL4A6-202ENST00000372216 MYT1LQ9UL68 1186 aa14.89□□□□□ -0.03
COL4A6-202ENST00000372216 CCER1Q8TC90 406 aaPredicted RBP14.73□□□□□ -0.05
COL4A6-202ENST00000372216 CNGB1Q14028 1251 aaPredicted RBP14.72□□□□□ -0.05
COL4A6-202ENST00000372216 YTHDC1Q96MU7 727 aaKnown RBP14.71□□□□□ -0.05
COL4A6-202ENST00000372216 POLR3GLQ9BT43 218 aa14.7□□□□□ -0.06
COL4A6-202ENST00000372216 MYT1Q01538 1121 aa14.67□□□□□ -0.06
COL4A6-202ENST00000372216 PPARGC1BQ86YN6 1023 aaKnown RBP14.66□□□□□ -0.06
COL4A6-202ENST00000372216 ABCC9O60706 1549 aa14.62□□□□□ -0.07
COL4A6-202ENST00000372216 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.61□□□□□ -0.07
COL4A6-202ENST00000372216 HNRNPUL2Q1KMD3 747 aaKnown RBP14.61□□□□□ -0.07
COL4A6-202ENST00000372216 ZEB1P37275 1124 aaPredicted RBP14.58□□□□□ -0.07
COL4A6-202ENST00000372216 SLC4A1APQ9BWU0 796 aaKnown RBP14.58□□□□□ -0.08
COL4A6-202ENST00000372216 PABPN1Q86U42 306 aaKnown RBP eCLIP14.53□□□□□ -0.08
COL4A6-202ENST00000372216 ITGAEP38570 1179 aa14.5□□□□□ -0.09
COL4A6-202ENST00000372216 NEFLP07196 543 aa14.45□□□□□ -0.1
COL4A6-202ENST00000372216 CENPBP07199 599 aaPredicted RBP14.44□□□□□ -0.1
COL4A6-202ENST00000372216 DAXXQ9UER7 740 aaPredicted RBP14.32□□□□□ -0.12
COL4A6-202ENST00000372216 LOC105371045A0A1W2PR82 267 aa14.3□□□□□ -0.12
COL4A6-202ENST00000372216 TRIM26Q12899 539 aaPredicted RBP14.29□□□□□ -0.12
COL4A6-202ENST00000372216 BCL11AQ9H165 835 aa14.26□□□□□ -0.13
COL4A6-202ENST00000372216 SLC24A1O60721 1099 aa14.23□□□□□ -0.13
COL4A6-202ENST00000372216 FBLN2P98095 1184 aa14.16□□□□□ -0.14
COL4A6-202ENST00000372216 PLPPR3Q6T4P5 718 aa14.15□□□□□ -0.14
COL4A6-202ENST00000372216 FAM50AQ14320 339 aaKnown RBP14.13□□□□□ -0.15
COL4A6-202ENST00000372216 CLSPNQ9HAW4 1339 aa14.09□□□□□ -0.15
COL4A6-202ENST00000372216 BCANQ96GW7 911 aa14.07□□□□□ -0.16
COL4A6-202ENST00000372216 TRIM52Q96A61 297 aa14.05□□□□□ -0.16
COL4A6-202ENST00000372216 ZNF316A6NFI3 1004 aaPredicted RBP14□□□□□ -0.17
COL4A6-202ENST00000372216 SCRIBQ14160 1630 aa13.99□□□□□ -0.17
COL4A6-202ENST00000372216 HRCP23327 699 aa13.95□□□□□ -0.18
COL4A6-202ENST00000372216 ZNF326Q5BKZ1 582 aaKnown RBP13.94□□□□□ -0.18
COL4A6-202ENST00000372216 ARID3CA6NKF2 412 aa13.92□□□□□ -0.18
COL4A6-202ENST00000372216 NEUROD1Q13562 356 aa13.91□□□□□ -0.18
COL4A6-202ENST00000372216 P3H3Q8IVL6 736 aa13.91□□□□□ -0.18
COL4A6-202ENST00000372216 ZNF777Q9ULD5 760 aaPredicted RBP13.79□□□□□ -0.2
COL4A6-202ENST00000372216 ZBTB47Q9UFB7 747 aaPredicted RBP13.79□□□□□ -0.2
COL4A6-202ENST00000372216 CCDC180Q9P1Z9 1646 aa13.76□□□□□ -0.21
COL4A6-202ENST00000372216 CSRNP3Q8WYN3 585 aa13.75□□□□□ -0.21
COL4A6-202ENST00000372216 ZCCHC6Q5VYS8 1495 aaKnown RBP13.75□□□□□ -0.21
COL4A6-202ENST00000372216 PLEKHG5O94827 1062 aa13.74□□□□□ -0.21
COL4A6-202ENST00000372216 A0A0G2JS52 829 aa13.73□□□□□ -0.21
COL4A6-202ENST00000372216 RTL5Q5HYW3 569 aaPredicted RBP13.72□□□□□ -0.21
COL4A6-202ENST00000372216 CANXP27824 592 aaKnown RBP13.72□□□□□ -0.21
COL4A6-202ENST00000372216 DIEXFQ68CQ4 756 aaKnown RBP13.71□□□□□ -0.22
COL4A6-202ENST00000372216 SCAF1Q9H7N4 1312 aaKnown RBP13.71□□□□□ -0.22
COL4A6-202ENST00000372216 CDK11AQ9UQ88 783 aaPredicted RBP13.7□□□□□ -0.22
COL4A6-202ENST00000372216 SENP3Q9H4L4 574 aaPredicted RBP13.69□□□□□ -0.22
COL4A6-202ENST00000372216 ESF1Q9H501 851 aaKnown RBP13.68□□□□□ -0.22
COL4A6-202ENST00000372216 NPM1P06748 294 aaKnown RBP eCLIP13.66□□□□□ -0.22
COL4A6-202ENST00000372216 RB1CC1Q8TDY2 1594 aa13.66□□□□□ -0.22
COL4A6-202ENST00000372216 ANP32CO43423 234 aa13.62□□□□□ -0.23
COL4A6-202ENST00000372216 CHGAP10645 457 aaKnown RBP13.6□□□□□ -0.23
COL4A6-202ENST00000372216 STAG3Q9UJ98 1225 aa13.58□□□□□ -0.23
COL4A6-202ENST00000372216 ZBTB7CA1YPR0 619 aa13.56□□□□□ -0.24
COL4A6-202ENST00000372216 NEFMP07197 916 aa13.56□□□□□ -0.24
COL4A6-202ENST00000372216 CHMP7Q8WUX9 453 aaPredicted RBP13.54□□□□□ -0.24
COL4A6-202ENST00000372216 NPM2Q86SE8 214 aaKnown RBP13.49□□□□□ -0.25
COL4A6-202ENST00000372216 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.47□□□□□ -0.25
COL4A6-202ENST00000372216 CHIC2Q9UKJ5 165 aa13.45□□□□□ -0.26
COL4A6-202ENST00000372216 TULP1O00294 542 aaPredicted RBP13.44□□□□□ -0.26
COL4A6-202ENST00000372216 NACADO15069 1562 aa13.43□□□□□ -0.26
COL4A6-202ENST00000372216 TONSLQ96HA7 1378 aa13.41□□□□□ -0.26
COL4A6-202ENST00000372216 SALL2Q9Y467 1007 aaPredicted RBP13.41□□□□□ -0.26
COL4A6-202ENST00000372216 BAZ1BQ9UIG0 1483 aaKnown RBP13.39□□□□□ -0.27
COL4A6-202ENST00000372216 C14orf37Q86TY3 774 aa13.37□□□□□ -0.27
COL4A6-202ENST00000372216 MTUS2Q5JR59 1369 aa13.37□□□□□ -0.27
COL4A6-202ENST00000372216 TSPY4P0CV99 314 aa13.36□□□□□ -0.27
COL4A6-202ENST00000372216 TSPY10P0CW01 314 aa13.36□□□□□ -0.27
COL4A6-202ENST00000372216 ERCC6Q03468 1493 aa13.36□□□□□ -0.27
COL4A6-202ENST00000372216 KCNH8Q96L42 1107 aa13.36□□□□□ -0.27
COL4A6-202ENST00000372216 ARXQ96QS3 562 aa13.35□□□□□ -0.27
COL4A6-202ENST00000372216 HSP90AA1P07900 732 aaKnown RBP13.31□□□□□ -0.28
COL4A6-202ENST00000372216 KDM2AQ9Y2K7 1162 aa13.29□□□□□ -0.28
COL4A6-202ENST00000372216 RSF1Q96T23 1441 aaPredicted RBP13.29□□□□□ -0.28
COL4A6-202ENST00000372216 CLIP1P30622 1438 aa13.28□□□□□ -0.28
COL4A6-202ENST00000372216 PLEKHD1A6NEE1 506 aa13.26□□□□□ -0.29
COL4A6-202ENST00000372216 GTF3C3Q9Y5Q9 886 aa13.25□□□□□ -0.29
COL4A6-202ENST00000372216 NCBP3Q53F19 620 aaKnown RBP13.25□□□□□ -0.29
COL4A6-202ENST00000372216 HAP1P54257 671 aaPredicted RBP13.24□□□□□ -0.29
COL4A6-202ENST00000372216 TAOK2Q9UL54 1235 aa13.24□□□□□ -0.29
COL4A6-202ENST00000372216 WRNQ14191 1432 aaPredicted RBP eCLIP13.23□□□□□ -0.29
COL4A6-202ENST00000372216 RRP7BPQ9NSQ0 103 aa13.23□□□□□ -0.29
COL4A6-202ENST00000372216 ARID4BQ4LE39 1312 aaPredicted RBP13.23□□□□□ -0.29
COL4A6-202ENST00000372216 GOLGA3Q08378 1498 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms