Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 MIR4502-201ENST00000580432 81 ntBASIC5.67□□□□□ -1.5
CLDN9O95484 AC005244.1-201ENST00000582566 339 ntBASIC5.67□□□□□ -1.5
CLDN9O95484 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.67□□□□□ -1.5
CLDN9O95484 AL136131.3-201ENST00000607600 188 ntBASIC5.67□□□□□ -1.5
CLDN9O95484 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CLDN9O95484 BX323046.1-201ENST00000610145 535 ntBASIC5.67□□□□□ -1.5
CLDN9O95484 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.67□□□□□ -1.5
CLDN9O95484 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.67□□□□□ -1.5
CLDN9O95484 AL355480.1-201ENST00000629041 99 ntBASIC5.67□□□□□ -1.5
CLDN9O95484 AC132825.8-201ENST00000640783 297 ntBASIC5.67□□□□□ -1.5
CLDN9O95484 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.67□□□□□ -1.5
CLDN9O95484 QRSL1P1-201ENST00000400977 1540 ntBASIC5.67□□□□□ -1.5
CLDN9O95484 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CLDN9O95484 FBXL21-201ENST00000297158 1305 ntBASIC5.67□□□□□ -1.5
CLDN9O95484 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.67□□□□□ -1.5
CLDN9O95484 AL354854.1-201ENST00000455940 1363 ntBASIC5.67□□□□□ -1.5
CLDN9O95484 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CLDN9O95484 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 AC004656.1-201ENST00000568479 4951 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 AC120036.2-201ENST00000509729 1474 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
CLDN9O95484 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
CLDN9O95484 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC5.66□□□□□ -1.5
CLDN9O95484 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 RN7SKP78-201ENST00000364711 318 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 AC016739.1-201ENST00000405359 345 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.66□□□□□ -1.5
CLDN9O95484 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 AL354893.1-201ENST00000433735 348 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 GAPDHP75-201ENST00000433910 943 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 AC013410.1-201ENST00000436223 1232 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 AL138899.2-201ENST00000439139 499 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.66□□□□□ -1.5
CLDN9O95484 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CLDN9O95484 RPL12P39-201ENST00000455456 496 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 AC021006.1-201ENST00000489849 553 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 RN7SL649P-201ENST00000496974 275 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.66□□□□□ -1.5
CLDN9O95484 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.66□□□□□ -1.5
CLDN9O95484 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.66□□□□□ -1.5
CLDN9O95484 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.66□□□□□ -1.5
CLDN9O95484 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.66□□□□□ -1.5
CLDN9O95484 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.66□□□□□ -1.5
CLDN9O95484 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.66□□□□□ -1.5
CLDN9O95484 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.66□□□□□ -1.5
CLDN9O95484 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.66□□□□□ -1.5
CLDN9O95484 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 RPA2P1-201ENST00000556557 721 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
CLDN9O95484 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.66□□□□□ -1.5
CLDN9O95484 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 AC092266.1-201ENST00000610958 165 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.66□□□□□ -1.5
CLDN9O95484 AL136228.1-201ENST00000622221 319 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.66□□□□□ -1.5
CLDN9O95484 AL596275.2-207ENST00000641188 675 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 CASC19-274ENST00000642018 970 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 PARP4P2-201ENST00000446672 3326 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
CLDN9O95484 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.66□□□□□ -1.5
CLDN9O95484 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.66□□□□□ -1.5
CLDN9O95484 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.66□□□□□ -1.5
CLDN9O95484 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.66□□□□□ -1.5
CLDN9O95484 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLDN9O95484 AP004607.3-201ENST00000530354 3915 ntBASIC5.66□□□□□ -1.5
CLDN9O95484 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.65□□□□□ -1.5
CLDN9O95484 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLDN9O95484 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.65□□□□□ -1.5
CLDN9O95484 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CLDN9O95484 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLDN9O95484 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.65□□□□□ -1.5
CLDN9O95484 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CLDN9O95484 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
CLDN9O95484 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLDN9O95484 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.65□□□□□ -1.5
CLDN9O95484 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CLDN9O95484 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CLDN9O95484 U3.10-201ENST00000364459 214 ntBASIC5.65□□□□□ -1.5
CLDN9O95484 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.65□□□□□ -1.5
CLDN9O95484 MIR130B-202ENST00000385018 82 ntBASIC5.65□□□□□ -1.5
CLDN9O95484 RAB5CP1-201ENST00000395972 580 ntBASIC5.65□□□□□ -1.5
CLDN9O95484 AL096711.1-201ENST00000404780 554 ntBASIC5.65□□□□□ -1.5
CLDN9O95484 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.65□□□□□ -1.5
CLDN9O95484 PNKDP1-201ENST00000435914 430 ntBASIC5.65□□□□□ -1.5
CLDN9O95484 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.65□□□□□ -1.5
CLDN9O95484 AC015983.1-201ENST00000441577 373 ntBASIC5.65□□□□□ -1.5
CLDN9O95484 CFL1P4-201ENST00000451536 498 ntBASIC5.65□□□□□ -1.5
CLDN9O95484 GEMIN2P1-201ENST00000454246 752 ntBASIC5.65□□□□□ -1.5
CLDN9O95484 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms