Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
AP4E1Q9UPM8 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 AL121906.2-201ENST00000621597 723 ntBASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 TREX1-205ENST00000625293 1783 ntBASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
AP4E1Q9UPM8 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
AP4E1Q9UPM8 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.44■□□□□ 0.86
AP4E1Q9UPM8 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 AC008403.3-201ENST00000598924 454 ntBASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.43■□□□□ 0.86
AP4E1Q9UPM8 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
AP4E1Q9UPM8 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.42■□□□□ 0.86
AP4E1Q9UPM8 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
AP4E1Q9UPM8 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
AP4E1Q9UPM8 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
AP4E1Q9UPM8 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
AP4E1Q9UPM8 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
AP4E1Q9UPM8 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms