Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMA1Q9UHB6 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 AC018553.1-201ENST00000616682 1458 ntBASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMA1Q9UHB6 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 AC116351.2-201ENST00000606540 1585 ntBASIC21.53■■□□□ 1.04
LIMA1Q9UHB6 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LIMA1Q9UHB6 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.03
LIMA1Q9UHB6 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 GPX1P1-201ENST00000388829 606 ntBASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
LIMA1Q9UHB6 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LIMA1Q9UHB6 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms