Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.74■□□□□ 0.91
SMARCAL1Q9NZC9 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCAL1Q9NZC9 MYCNOS-205ENST00000641950 531 ntBASIC20.74■□□□□ 0.91
SMARCAL1Q9NZC9 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCAL1Q9NZC9 LINC01465-201ENST00000408887 1940 ntBASIC20.74■□□□□ 0.91
SMARCAL1Q9NZC9 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.74■□□□□ 0.91
SMARCAL1Q9NZC9 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCAL1Q9NZC9 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCAL1Q9NZC9 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCAL1Q9NZC9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCAL1Q9NZC9 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.74■□□□□ 0.91
SMARCAL1Q9NZC9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCAL1Q9NZC9 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCAL1Q9NZC9 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 AL162430.1-201ENST00000480705 870 ntBASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMARCAL1Q9NZC9 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 PGM5P4-201ENST00000421970 445 ntBASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SMARCAL1Q9NZC9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.7■□□□□ 0.91
SMARCAL1Q9NZC9 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
SMARCAL1Q9NZC9 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.7■□□□□ 0.91
SMARCAL1Q9NZC9 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 AC026471.1-201ENST00000564629 3026 ntBASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SMARCAL1Q9NZC9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SMARCAL1Q9NZC9 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms