Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 AC116050.2-201ENST00000612102 1779 ntBASIC17.99■□□□□ 0.47
DDX28Q9NUL7 FP700111.2-201ENST00000619190 1892 ntBASIC17.99■□□□□ 0.47
DDX28Q9NUL7 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.99■□□□□ 0.47
DDX28Q9NUL7 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 RBM17P2-201ENST00000616397 1405 ntBASIC17.98■□□□□ 0.47
DDX28Q9NUL7 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 AC020907.5-201ENST00000624372 1936 ntBASIC17.98■□□□□ 0.47
DDX28Q9NUL7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 IKBKGP1-201ENST00000612193 1073 ntBASIC17.98■□□□□ 0.47
DDX28Q9NUL7 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
DDX28Q9NUL7 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 HACD1-201ENST00000326961 773 ntTSL 2 BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.97■□□□□ 0.47
DDX28Q9NUL7 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
DDX28Q9NUL7 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.96■□□□□ 0.47
DDX28Q9NUL7 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
DDX28Q9NUL7 AC007613.1-201ENST00000572811 2597 ntBASIC17.95■□□□□ 0.46
DDX28Q9NUL7 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
DDX28Q9NUL7 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms