Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 AC092865.7-201ENST00000641832 219 ntBASIC23.35■■□□□ 1.33
DDX4Q9NQI0 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
DDX4Q9NQI0 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
DDX4Q9NQI0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
DDX4Q9NQI0 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC23.35■■□□□ 1.33
DDX4Q9NQI0 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 AC113347.1-201ENST00000413321 391 ntBASIC23.34■■□□□ 1.33
DDX4Q9NQI0 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 KRT18P57-201ENST00000443599 1254 ntBASIC23.34■■□□□ 1.33
DDX4Q9NQI0 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 AL445228.2-201ENST00000605589 952 ntBASIC23.34■■□□□ 1.33
DDX4Q9NQI0 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
DDX4Q9NQI0 AC073508.3-201ENST00000619697 1419 ntBASIC23.33■■□□□ 1.33
DDX4Q9NQI0 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC23.33■■□□□ 1.33
DDX4Q9NQI0 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
DDX4Q9NQI0 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
DDX4Q9NQI0 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
DDX4Q9NQI0 TERF1P1-201ENST00000311003 1181 ntBASIC23.33■■□□□ 1.33
DDX4Q9NQI0 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
DDX4Q9NQI0 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC23.33■■□□□ 1.33
DDX4Q9NQI0 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC23.33■■□□□ 1.33
DDX4Q9NQI0 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC23.33■■□□□ 1.33
DDX4Q9NQI0 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC23.33■■□□□ 1.33
DDX4Q9NQI0 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
DDX4Q9NQI0 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
DDX4Q9NQI0 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
DDX4Q9NQI0 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC23.33■■□□□ 1.32
DDX4Q9NQI0 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.32
DDX4Q9NQI0 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 FDX2-206ENST00000492239 773 ntTSL 2 BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 TMA16-209ENST00000513272 803 ntTSL 2 BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 MOK-225ENST00000522867 1883 ntTSL 5 BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 KRT18P22-201ENST00000402024 1347 ntBASIC23.32■■□□□ 1.32
DDX4Q9NQI0 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC23.32■■□□□ 1.32
DDX4Q9NQI0 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 SLC25A3P1-201ENST00000443844 931 ntBASIC23.31■■□□□ 1.32
DDX4Q9NQI0 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 AP005242.2-201ENST00000580065 1175 ntBASIC23.31■■□□□ 1.32
DDX4Q9NQI0 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 AC131212.4-201ENST00000623606 975 ntBASIC23.31■■□□□ 1.32
DDX4Q9NQI0 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 RCC2P6-201ENST00000526625 1557 ntBASIC23.31■■□□□ 1.32
DDX4Q9NQI0 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC23.31■■□□□ 1.32
DDX4Q9NQI0 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 CD37-204ENST00000535669 1674 ntTSL 2 BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 RBM42-202ENST00000586618 771 ntTSL 3 BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 DGCR10-201ENST00000609839 495 ntBASIC23.3■■□□□ 1.32
DDX4Q9NQI0 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 AC130371.2-201ENST00000619443 611 ntBASIC23.3■■□□□ 1.32
DDX4Q9NQI0 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC23.3■■□□□ 1.32
DDX4Q9NQI0 AL512408.1-201ENST00000569378 2000 ntBASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms