Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 AC142381.2-201ENST00000566120 298 ntBASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 AC004854.2-201ENST00000608450 1441 ntBASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC28BQ9BUN5 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 KRT8P20-201ENST00000423953 1409 ntBASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
CCDC28BQ9BUN5 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.14■□□□□ 0.66
CCDC28BQ9BUN5 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC28BQ9BUN5 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC28BQ9BUN5 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC28BQ9BUN5 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCDC28BQ9BUN5 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCDC28BQ9BUN5 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC28BQ9BUN5 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CCDC28BQ9BUN5 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC28BQ9BUN5 LTB4R2-202ENST00000528054 3092 ntBASIC19.14■□□□□ 0.65
CCDC28BQ9BUN5 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC28BQ9BUN5 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC28BQ9BUN5 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CCDC28BQ9BUN5 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC28BQ9BUN5 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 AL591742.1-201ENST00000604433 565 ntBASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CCDC28BQ9BUN5 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC28BQ9BUN5 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms