Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LINC00477Q96M19 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC14.76□□□□□ -0.05
LINC00477Q96M19 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LINC00477Q96M19 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LINC00477Q96M19 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LINC00477Q96M19 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LINC00477Q96M19 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
LINC00477Q96M19 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
LINC00477Q96M19 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC14.75□□□□□ -0.05
LINC00477Q96M19 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 PWWP2AP1-201ENST00000429776 2273 ntBASIC14.75□□□□□ -0.05
LINC00477Q96M19 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 METTL26-203ENST00000397664 604 ntTSL 2 BASIC14.75□□□□□ -0.05
LINC00477Q96M19 AL512625.2-201ENST00000417533 625 ntBASIC14.75□□□□□ -0.05
LINC00477Q96M19 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC14.75□□□□□ -0.05
LINC00477Q96M19 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC14.75□□□□□ -0.05
LINC00477Q96M19 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 Z82202.1-201ENST00000623446 1880 ntBASIC14.75□□□□□ -0.05
LINC00477Q96M19 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LINC00477Q96M19 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
LINC00477Q96M19 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 CYP2T1P-201ENST00000432607 1285 ntBASIC14.74□□□□□ -0.05
LINC00477Q96M19 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
LINC00477Q96M19 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC00477Q96M19 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
LINC00477Q96M19 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC14.73□□□□□ -0.05
LINC00477Q96M19 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC14.73□□□□□ -0.05
LINC00477Q96M19 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC14.73□□□□□ -0.05
LINC00477Q96M19 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC14.73□□□□□ -0.05
LINC00477Q96M19 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC14.73□□□□□ -0.05
LINC00477Q96M19 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC14.73□□□□□ -0.05
LINC00477Q96M19 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC14.73□□□□□ -0.05
LINC00477Q96M19 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 AC010980.2-201ENST00000587099 1412 ntBASIC14.73□□□□□ -0.05
LINC00477Q96M19 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC14.73□□□□□ -0.05
LINC00477Q96M19 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC14.73□□□□□ -0.05
LINC00477Q96M19 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00477Q96M19 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC14.73□□□□□ -0.05
LINC00477Q96M19 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC14.72□□□□□ -0.05
LINC00477Q96M19 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
LINC00477Q96M19 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00477Q96M19 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms