Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.84■□□□□ 0.61
VMP1Q96GC9 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VMP1Q96GC9 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VMP1Q96GC9 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.83■□□□□ 0.61
VMP1Q96GC9 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VMP1Q96GC9 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
VMP1Q96GC9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VMP1Q96GC9 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VMP1Q96GC9 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
VMP1Q96GC9 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.83■□□□□ 0.61
VMP1Q96GC9 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VMP1Q96GC9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.83■□□□□ 0.61
VMP1Q96GC9 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VMP1Q96GC9 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VMP1Q96GC9 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VMP1Q96GC9 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
VMP1Q96GC9 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
VMP1Q96GC9 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.83■□□□□ 0.6
VMP1Q96GC9 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
VMP1Q96GC9 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.83■□□□□ 0.6
VMP1Q96GC9 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.83■□□□□ 0.6
VMP1Q96GC9 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VMP1Q96GC9 AC092368.3-202ENST00000574180 1591 ntBASIC18.83■□□□□ 0.6
VMP1Q96GC9 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
VMP1Q96GC9 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VMP1Q96GC9 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
VMP1Q96GC9 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VMP1Q96GC9 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VMP1Q96GC9 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
VMP1Q96GC9 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VMP1Q96GC9 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VMP1Q96GC9 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VMP1Q96GC9 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VMP1Q96GC9 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.82■□□□□ 0.6
VMP1Q96GC9 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.82■□□□□ 0.6
VMP1Q96GC9 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.82■□□□□ 0.6
VMP1Q96GC9 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.82■□□□□ 0.6
VMP1Q96GC9 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VMP1Q96GC9 MIR4651-201ENST00000582622 73 ntBASIC18.82■□□□□ 0.6
VMP1Q96GC9 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.82■□□□□ 0.6
VMP1Q96GC9 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VMP1Q96GC9 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VMP1Q96GC9 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VMP1Q96GC9 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.81■□□□□ 0.6
VMP1Q96GC9 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VMP1Q96GC9 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VMP1Q96GC9 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VMP1Q96GC9 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.81■□□□□ 0.6
VMP1Q96GC9 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.81■□□□□ 0.6
VMP1Q96GC9 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.81■□□□□ 0.6
VMP1Q96GC9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VMP1Q96GC9 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VMP1Q96GC9 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VMP1Q96GC9 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.81■□□□□ 0.6
VMP1Q96GC9 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VMP1Q96GC9 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VMP1Q96GC9 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.81■□□□□ 0.6
VMP1Q96GC9 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
VMP1Q96GC9 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.81■□□□□ 0.6
VMP1Q96GC9 TSPY20P-201ENST00000450910 630 ntBASIC18.81■□□□□ 0.6
VMP1Q96GC9 UNC93B5-201ENST00000530315 699 ntBASIC18.81■□□□□ 0.6
VMP1Q96GC9 PNMA6B-201ENST00000538162 1200 ntBASIC18.81■□□□□ 0.6
VMP1Q96GC9 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.81■□□□□ 0.6
VMP1Q96GC9 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VMP1Q96GC9 FP700111.2-201ENST00000619190 1892 ntBASIC18.81■□□□□ 0.6
VMP1Q96GC9 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VMP1Q96GC9 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VMP1Q96GC9 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VMP1Q96GC9 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VMP1Q96GC9 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VMP1Q96GC9 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VMP1Q96GC9 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
VMP1Q96GC9 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VMP1Q96GC9 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VMP1Q96GC9 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VMP1Q96GC9 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.8■□□□□ 0.6
VMP1Q96GC9 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VMP1Q96GC9 ABHD17AP1-201ENST00000358206 933 ntBASIC18.8■□□□□ 0.6
VMP1Q96GC9 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VMP1Q96GC9 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VMP1Q96GC9 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.8■□□□□ 0.6
VMP1Q96GC9 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.8■□□□□ 0.6
VMP1Q96GC9 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
VMP1Q96GC9 FAM201B-201ENST00000458407 597 ntBASIC18.8■□□□□ 0.6
VMP1Q96GC9 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VMP1Q96GC9 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms