Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LMX1AQ8TE12 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.23■□□□□ 0.67
LMX1AQ8TE12 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 RN7SL850P-201ENST00000579959 291 ntBASIC19.23■□□□□ 0.67
LMX1AQ8TE12 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LMX1AQ8TE12 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 CYP2D8P-201ENST00000433633 1490 ntBASIC19.22■□□□□ 0.67
LMX1AQ8TE12 FSCN1P1-201ENST00000568912 1481 ntBASIC19.22■□□□□ 0.67
LMX1AQ8TE12 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.22■□□□□ 0.67
LMX1AQ8TE12 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LMX1AQ8TE12 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 AC131212.4-201ENST00000623606 975 ntBASIC19.21■□□□□ 0.67
LMX1AQ8TE12 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LMX1AQ8TE12 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 AC026271.3-201ENST00000571884 352 ntBASIC19.2■□□□□ 0.66
LMX1AQ8TE12 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.2■□□□□ 0.66
LMX1AQ8TE12 AC010947.1-201ENST00000623454 693 ntBASIC19.2■□□□□ 0.66
LMX1AQ8TE12 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LMX1AQ8TE12 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.19■□□□□ 0.66
LMX1AQ8TE12 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms